Detail information of GWHGAAEX014657/evm.TU.scaffold_60.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428311014|ref|YP_007121991.1| | 1.00E-47 | hypothetical protein Mic7113_2802 [Microcoleus sp. PCC 7113] |
| KOG | KOG0619 | 2.00E-158 | FOG: Leucine rich repeat |
| nr | gi|743778832|ref|XP_010919876.1| | 0 | PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Elaeis guineensis] |
| Swissprot | tr|Q8S7M7|PIRL5_ORYSJ | 0 | Plant intracellular Ras-group-related LRR protein 5 |
| trEMBL | tr|M0SQ86|M0SQ86_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P19230_001} |
| TAIR | AT4G35470 | 2.00E-158 | plant intracellular ras group-related LRR 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000061 | 1933596 | 1941054 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014657
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 223 | 278 | 3.00E-09 |
| PF13855.5 | LRR_8 | 339 | 393 | 2.40E-09 |
| PF13855.5 | LRR_8 | 405 | 457 | 1.30E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.180 |
| SRR2545915 | Juvenile tuber | 23.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.040 |
| SRR5643514 | five period of Gastrodia elata | 25.140 | |
| SRR5643515 | five period of Gastrodia elata | 26.790 | |
| SRR5643524 | five period of Gastrodia elata | 22.440 | |
| SRR5643525 | five period of Gastrodia elata | 30.250 | |
| SRR5643528 | five period of Gastrodia elata | 24.430 | |
| SRR5643658 | five period of Gastrodia elata | 36.690 | |
| SRR5643659 | five period of Gastrodia elata | 22.190 | |
| SRR5643660 | five period of Gastrodia elata | 24.170 | |
| SRR5643661 | five period of Gastrodia elata | 22.830 | |
| SRR5643662 | five period of Gastrodia elata | 21.350 | |
| SRR5643663 | five period of Gastrodia elata | 20.650 | |
| SRR5643664 | five period of Gastrodia elata | 21.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.45 |
| Juven | Juvenile tuber | 32.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 71.39 | |
| Mother_Juven | Mother tuber of Juvenile | 49.12 |