Detail information of GWHGAAEX014659/evm.TU.scaffold_60.65


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743888238|ref|XP_010910571.1|1.83E-30PREDICTED: B3 domain-containing protein Os04g0386900-like [Elaeis guineensis]
Swissprottr|Q7XLP4|Y4869_ORYSJ6.00E-31B3 domain-containing protein Os04g0386900
trEMBLtr|A2XSR4|A2XSR4_ORYSI3.00E-29Putative uncharacterized protein {ECO:0000313|EMBL:EAY93874.1}
TAIRAT1G494802.00E-06related to vernalization1 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006120299972074468+
Transcript Sequence

Network for GWHGAAEX014659

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.20B3841809.00E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.730
SRR2545915Juvenile tuber38.530
SRP108465SRR5643513five period of Gastrodia elata25.570
SRR5643514five period of Gastrodia elata19.650
SRR5643515five period of Gastrodia elata12.820
SRR5643524five period of Gastrodia elata20.990
SRR5643525five period of Gastrodia elata13.580
SRR5643528five period of Gastrodia elata15.850
SRR5643658five period of Gastrodia elata12.730
SRR5643659five period of Gastrodia elata11.940
SRR5643660five period of Gastrodia elata12.980
SRR5643661five period of Gastrodia elata16.540
SRR5643662five period of Gastrodia elata13.880
SRR5643663five period of Gastrodia elata14.390
SRR5643664five period of Gastrodia elata13.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.680
SRR6049655Rhizomagastrodiae_C368-T10_good_19.770
SRR6049656Rhizomagastrodiae_C368-T07_good_117.100
SRR6049657Rhizomagastrodiae_C368-T07_good_115.890
SRR6049658Rhizomagastrodiae_C368-T04_good_113.460
SRR6049659Rhizomagastrodiae_C368-T04_good_116.490
SRR6049660Rhizomagastrodiae_C368-T01_good_119.250
SRR6049661Rhizomagastrodiae_C368-T04_good_113.330
SRR6049662Rhizomagastrodiae_C368-T01_good_118.080
SRR6049663Rhizomagastrodiae_C368-T01_good_124.340
SRR6049664Rhizomagastrodiae_C368-T10_good_124.260
SRR6049665Rhizomagastrodiae_C368-T10_good_124.260
SRP279888GastroGastrodia elata tuber 17.91
JuvenJuvenile tuber21.52
Mother_GastroMother tuber of Gastrodia elata 29.60
Mother_JuvenMother tuber of Juvenile 17.82