Gene detail

Detail information of GWHGAAEX014667/evm.TU.scaffold_60.92

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4282	1.00E-23	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
nr	gi\|670439026\|ref\|XP_008659928.1\|	6.54E-45	PREDICTED: trihelix transcription factor GTL1 [Zea mays]
Swissprot	tr\|Q9LJG8\|ASIL2_ARATH	9.00E-11	Trihelix transcription factor ASIL2 {ECO:0000305}
trEMBL	tr\|K7VCC4\|K7VCC4_MAIZE	2.00E-45	Uncharacterized protein {ECO:0000313\|EMBL:AFW87844.1, ECO:0000313\|EnsemblPlants:GRMZM2G428470_P01}
TAIR	AT2G44730	1.00E-23	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000061	3181811	3183238	-

Transcript Sequence
>GWHTAAEX014667 TCTTTTACTATAGTGTAATTTTTTCACCAATTATGTACAAAAAAATAAAACTTGAGGAGGCGTCTTTAAACAGACAAGAGAGGCGCAGCCACGCATTCCACCGATGCGGTCAACTCACCGCCCGCCGCGCCGCGCTGGAGTTGGTGGGCGGGATAGGCCGCCCACGACCCCTACAACCGCGCTCTCGGCACCGCACACGACCCTTTGGCGGGCGGTCACCCGATCCCGCCCCGCTCCACTATAAAACCCTACAGCCAAGCACAGATCTCAGCCCTAAATCCCTCTTCCCCTCCTCTCCATCATGGCGTCCCCTGCCGGCATCGTCTCCGTCTCCGGCGTCGAATCCACGTCGGTATCTCCTCCTTCCCGCCGCGGGCTCCCTCCCCCTTGCTGGTCGCACGACGAAACCCTAGCCCTCATCCAATCCTATCGCGCCAAGTGGCACTCCCTCCGCCTCTCCAACCTCCGCGCCGGCGACTGGGAAGACGTCGCCGGCGATGTCACCCGCCGCTGCTCCAGCCTCCCTTCTTCCACTCCCAAGACCTCCGTTCAGTGCCGCCATAAGGTGGAGAAACTCCGCAAGCGATTTCGATCAGAGCACCTCCGCCCTTCTTCCCGCTGGCCCTTCTTCTCCCTCATGGAATCCCTCGACCGCCCTGCTCCCAAAGGGTTCCGATTCAAGGTTCCCAAAGCTCTACGTTCCACCATCGTGAACCCTTCTTCTTCCGAACGGGCCGTAAGGCCTTTTGCAGAGGAGATGAGGCGCAGGCTGGAGAGAAAGAGGCTGGAGAAGCAGGTGAGGGATGAAGACGCTGTGGGGGGGATGATCTCGGCCCTGAGAACGGTGGGAGATGGGCTTATGAGGGTCGAACGGATGAAGATCGACATGGCCAGGGAGACGGAGAGGATGAGGATGGAGATGGAGCTCAAGCGGACGGAGATGATGCTTGATTTGCAGAGTCAGATCGTTGGTGCCTTCGTGAAGGGGTTTGTAGGTGGCAGGGTGGATAGATAGGCCCAACTCTCTGCCGATGCTTGATCCAGAGATGCTGGCCTTTCCCTTTTTTGCCTTTTTTAGGATTATGCATTAGTAATTTATTTTTGGCGGAAGGATTGTGGAGAATTTGTGCTGGAAATTTCATTTTGATCCGTGATCCTCAGTGTGTTACTATCGTAGAATATGATCATTTTCTGCTTTGATGATAAACACATTATTTTCCTACAAAATGCAGCTACAATCACTCTTGAGTTTCTGCAGTCTTCCATTGTGCTATCTAGTTACAATTTCAAGGCATAAAATTTACTGAGAAACTATAACAAAAACTATTCTGCAGTCTTCCATTGTGCTTCTATGCACTCGTGTGAAAAACTAATGATGATTAAAGTGCCAGTTGTGCTTCCTCTCAGGCGCCTTCAAATTGCTTATAG

Network for GWHGAAEX014667

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.5	Myb_DNA-bind_4	29	116	8.80E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.890
SRP064423	SRR2545915	Juvenile tuber	32.830
SRP108465	SRR5643513	five period of Gastrodia elata	47.680
	SRR5643514	five period of Gastrodia elata	48.740
	SRR5643515	five period of Gastrodia elata	67.940
	SRR5643524	five period of Gastrodia elata	47.410
	SRR5643525	five period of Gastrodia elata	86.290
	SRR5643528	five period of Gastrodia elata	83.080
	SRR5643658	five period of Gastrodia elata	78.530
	SRR5643659	five period of Gastrodia elata	51.190
	SRR5643660	five period of Gastrodia elata	53.010
	SRR5643661	five period of Gastrodia elata	56.290
	SRR5643662	five period of Gastrodia elata	63.850
	SRR5643663	five period of Gastrodia elata	56.410
	SRR5643664	five period of Gastrodia elata	70.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	60.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	56.560
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	51.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.400
SRP279888	Gastro	Gastrodia elata tuber	67.63
	Juven	Juvenile tuber	61.08
	Mother_Gastro	Mother tuber of Gastrodia elata	149.39
	Mother_Juven	Mother tuber of Juvenile	75.45