Detail information of GWHGAAEX014669/evm.TU.scaffold_60.95
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4086 | 2.00E-75 | Transcriptional regulator SOH1 |
| nr | gi|743778631|ref|XP_010919780.1| | 2.05E-92 | PREDICTED: mediator of RNA polymerase II transcription subunit 31 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q8VYB1|MED31_ARATH | 6.00E-76 | Mediator of RNA polymerase II transcription subunit 31 |
| trEMBL | tr|M0S6T2|M0S6T2_MUSAM | 2.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P10410_001} |
| TAIR | AT5G19910 | 2.00E-75 | SOH1 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000061 | 3282482 | 3300005 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014669
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05669.11 | Med31 | 23 | 115 | 1.80E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SOH1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003712 | Molecular Function | transcription cofactor activity |
| GO:0016592 | Cellular Component | mediator complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.690 |
| SRR2545915 | Juvenile tuber | 16.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.720 |
| SRR5643514 | five period of Gastrodia elata | 7.830 | |
| SRR5643515 | five period of Gastrodia elata | 12.120 | |
| SRR5643524 | five period of Gastrodia elata | 6.400 | |
| SRR5643525 | five period of Gastrodia elata | 13.470 | |
| SRR5643528 | five period of Gastrodia elata | 11.160 | |
| SRR5643658 | five period of Gastrodia elata | 14.450 | |
| SRR5643659 | five period of Gastrodia elata | 12.530 | |
| SRR5643660 | five period of Gastrodia elata | 9.760 | |
| SRR5643661 | five period of Gastrodia elata | 15.260 | |
| SRR5643662 | five period of Gastrodia elata | 14.940 | |
| SRR5643663 | five period of Gastrodia elata | 12.930 | |
| SRR5643664 | five period of Gastrodia elata | 12.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.08 |
| Juven | Juvenile tuber | 8.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.82 | |
| Mother_Juven | Mother tuber of Juvenile | 12.39 |