Gene detail

Detail information of GWHGAAEX014673/evm.TU.scaffold_60.99

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|410670654\|ref\|YP_006923025.1\|	9.00E-14	Hef nuclease [Methanolobus psychrophilus R15]
KOG	KOG0442	0	Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4
nr	gi\|743778649\|ref\|XP_010919790.1\|	0	PREDICTED: DNA repair endonuclease UVH1 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9LKI5\|XPF_ARATH	0	DNA repair endonuclease UVH1
trEMBL	tr\|K4A5C5\|K4A5C5_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si034079m}
TAIR	AT5G41150	0	Restriction endonuclease, type II-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000061	3373115	3398089	-

Transcript Sequence
>GWHTAAEX014673 ATGGTTCCTTTTCAGGAGCAAATCATCGCCGATCTCCTCGACGACCCCAATGGCGGCGTCGTCGTCCTCTCTTCCGGCCTACCCATCCACTCCCTCGTTGCATCCCTCGTCCTCCTCCACCACCCCTCGCAAGGCTCCCTCCTCATCCTCTCTGCATCAGAGTCACAGAAATCCTCCATCTCCCGGTCCCTTCTCCAAATCCCTAACCCTAACCCTAACCCTATTGCCCCCACTGACATTCCTGGGGACGTTCCCTCCCACCACCGCACAGCCCTTTACGCCAGCGGAGCCTCCTTCTTCGTCACTCCTCGTATCCTCATCGCAGATCTCCTCACCTCCCGCGTCCCGCCCTCTTCTATCGCCGGTCTCCTTATCCTCAACGCCCACCGCCTCACGGATACCTCCACCGAGGCTTTCATCGCCCGCATTCTGCGCTCTCTGTCCCGCACCGCTTACGTTCATGCACTCACCGACCGCCCTCACTCCATGATCGCCGGGTTCGCCAAGTCCGAGCGAATCATGAAGAGCTTGTACGTGCGGAGACTTCACCTCTGGCCGCGATTCCACGTTCTCGTCGCCGGCGATCTCGAGAAGACTCCTCCGGAAGTGGTCGATGTCAGGGTGCCGATGACGCCTGCGATGAAGGGAATTCAGCAGGCTGTGCTGGAGACAATGGATGCGTGTCTCAAGGAGCTCAGGAGGACGAACAAGGTCGATGTCGAGGATCTTACTGTGGAGAATGGGCTATTCAAATCATTTGATGAGGTTGTGAGGCGGCAGCTTGATCCCATATGGCATACACTTGGGAAGAAAACCAAACAGTTGGTCAGCGATTTGAGAACACTTCGGAAATTGTTGGATTATCTTGTCAGGTATGATGCTGTGACATATTTGAAGTACCTTGATACACTGAGGGTCTCTGAAGGGGTGCGTTCCGTTTGGATATTTGCAGAATCTAGTTACAAGATATTTGAGCTTGCAAAGAAGAGAGTTTATCAGGTGGTGAGGGCTGATGGAGTAAGAATAGGTGCAGAAAGGAAGAGCACTGTAGGCAAGAGGAGGAGAGAAAATGGGAATATTATGACAAAAGAGATTGAAAATGTAAATGCCAAAACTGAAGCCAATATTGGAGTTGTACTGGAGGAAGTATTGGAGAGAGCACCCAAGTGGAAGGTGTTGCATGAGTTGCTTGAGGAGATTGAAGCAGAACGTAGAATAGAAGCTTCAGAAGGAAAAAATTTAATTGAGGGAGATGATAATAATGATATTGTTTTGGTTGTATGCAAAGATGAGCGTTCATGCCTGCAGTTGGAAGACTGCATTATTAAGAACCCGCATCAGGTAGTAATGCAGCGAGAGTGGGATAAGTACTTATTGGGCAAGGCAGAATTGAATAACATGCAGAAACACAATAAGAAAAAATCTCAAGATCCTAAAGGATATGGTATTTTTGATGGAGCAATTACTAATGGATCATGTGAGAATTCTGATCCTAGCACTATTAGCAAACTGGAAAATGATGCATTGTTAAAAGCAGCATCAGAAATTAGCCATATAACTATAGAAGAAATTGCTGTAAGAGATGATTCTAAACTTGTTGCTAGAAAGCGGGGTTCTACCAAAGGAAGAGTTAGAGGAAGGTCTCACAAAGCAATTACAGAAGAGTGGGCTTCTCGAAATAATCACAAGATATTAGCTGGTAAGGATCAAATGATGAAGTTATGTTCAGAAACTGCATCGCAAGAAGCCAAGACCGGTGTTCAGGAAAATCATTTCATCAATAATATTGATAATGGTTATGTTCCAAGGCATGCCCATGCTTCTAGCGACTCAACGTTCAATGATGCTAGGTCAATTCCTCCCGTGCAATTTCATGCTTTAGAGAAGGATGAACACATACTTGACATCTGGAAACCTAGTGTCATTGTTGTTTTTCATCCTGATATGACATTTGTGAGAGAGATTGAAGTATATAAAGCAGAGAACACCTCAGTAAAATTGAAAGTTTATTTTCTCTTCTATGAAAACTCTACCGAGGAGCAAAAATTTGAAGCAAGTATACGTCGAGAAAATGGAGCATTCGAATCATTGATTAGGCAGAAATCTTTGTTGATGATTCCTGTGGACCAGGATGGACGATGCATTGGACCCTCAACACTTTGTGAGCCAAGCTCATTTGCTTCACAGAACTCGTTAACCAGAAAGGCTGGTGGTAGGAAGACAATGGAGAAAGAGATGCAGGTCATTGTGGATATGAGGGAGTTCATGAGCAGCCTTCCAAATGTTCTTCACAAGAAGGGCATGAAAATCGTGCCAGTTACACTTGAAGTTGGTGATTATGTTTTGTCACCCTTTATTTGTGTTGAAAGGAAGAGCATTGGTGATCTGTATCAAAGTTTTTCATCAGGTCGACTGTATCATCAAGTAGAAACAATGATTCGTTACTACAAAATACCTGTTCTTCTAATTGAATTTTCACAGGATAGAAGCTTTTCTTTTCAGCCCTCCAGTGACTTGGGTGATGATGTTTCACCAACCAGCGTAATATCAAAACTTTCTTTGCTAGTCATACATTTTCCGAGGCTGCGTATTGTTTGGTCTCGCAGCGTACATGCAACAGCAGATATATTTGCATCTCTTAAGGCAAACCAGGAGGAACCAGATGAAAACAAGGCTATTTGGGTTGGCGTTCCTTCAGAGGATGGCATTGTAGAAGACGATGTGAGGGCTGAGAACTACAATACTACGGCAATTGAGTTTTTGAGGCGTCTCCCAGGTGTGACTGATTCAAATTACAGATCTCTGATGGACGGCTGCAAGAGTCTTGCTGACCTTGCCCTTATTCCTGTTGAGAGGCTGGCAGAGCTCATGGGTGGTCAGAAGCCAGCAAAAATGCTGAGAGAATTCCTTGATGCCAAGTTTCCAACTATGTTATGA

Network for GWHGAAEX014673

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02732.14	ERCC4	750	880	5.20E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10848	ERCC4, XPF	Nucleotide excision repair	map03420
K10848	ERCC4, XPF	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0004518	Molecular Function	nuclease activity
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.310
SRP064423	SRR2545915	Juvenile tuber	13.990
SRP108465	SRR5643513	five period of Gastrodia elata	16.020
	SRR5643514	five period of Gastrodia elata	17.130
	SRR5643515	five period of Gastrodia elata	16.070
	SRR5643524	five period of Gastrodia elata	17.400
	SRR5643525	five period of Gastrodia elata	19.520
	SRR5643528	five period of Gastrodia elata	20.950
	SRR5643658	five period of Gastrodia elata	21.070
	SRR5643659	five period of Gastrodia elata	13.550
	SRR5643660	five period of Gastrodia elata	13.710
	SRR5643661	five period of Gastrodia elata	11.430
	SRR5643662	five period of Gastrodia elata	11.970
	SRR5643663	five period of Gastrodia elata	13.230
	SRR5643664	five period of Gastrodia elata	13.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.190
SRP279888	Gastro	Gastrodia elata tuber	16.80
	Juven	Juvenile tuber	28.30
	Mother_Gastro	Mother tuber of Gastrodia elata	12.41
	Mother_Juven	Mother tuber of Juvenile	17.31