Detail information of GWHGAAEX014678/evm.TU.scaffold_60.110


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743778682|ref|XP_010919808.1|1.64E-143PREDICTED: novel plant SNARE 11-like isoform X1 [Elaeis guineensis]
Swissprottr|Q944A9|NPS11_ARATH1.00E-126Novel plant SNARE 11
trEMBLtr|A0A067LNE1|A0A067LNE1_JATCU3.00E-137Uncharacterized protein {ECO:0000313|EMBL:KDP45989.1}
TAIRAT2G351907.00E-122novel plant snare 11

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006135820763634611+
Transcript Sequence

Network for GWHGAAEX014678

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03908.12Sec201512269.50E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to ER
GO:0005484Molecular FunctionSNAP receptor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.110
SRR2545915Juvenile tuber17.520
SRP108465SRR5643513five period of Gastrodia elata28.920
SRR5643514five period of Gastrodia elata31.100
SRR5643515five period of Gastrodia elata27.360
SRR5643524five period of Gastrodia elata28.620
SRR5643525five period of Gastrodia elata29.680
SRR5643528five period of Gastrodia elata36.540
SRR5643658five period of Gastrodia elata32.910
SRR5643659five period of Gastrodia elata23.660
SRR5643660five period of Gastrodia elata21.820
SRR5643661five period of Gastrodia elata19.870
SRR5643662five period of Gastrodia elata23.410
SRR5643663five period of Gastrodia elata21.710
SRR5643664five period of Gastrodia elata18.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.620
SRR6049655Rhizomagastrodiae_C368-T10_good_127.700
SRR6049656Rhizomagastrodiae_C368-T07_good_126.760
SRR6049657Rhizomagastrodiae_C368-T07_good_119.380
SRR6049658Rhizomagastrodiae_C368-T04_good_115.800
SRR6049659Rhizomagastrodiae_C368-T04_good_117.320
SRR6049660Rhizomagastrodiae_C368-T01_good_117.110
SRR6049661Rhizomagastrodiae_C368-T04_good_121.640
SRR6049662Rhizomagastrodiae_C368-T01_good_134.940
SRR6049663Rhizomagastrodiae_C368-T01_good_124.710
SRR6049664Rhizomagastrodiae_C368-T10_good_134.670
SRR6049665Rhizomagastrodiae_C368-T10_good_134.670
SRP279888GastroGastrodia elata tuber 15.57
JuvenJuvenile tuber16.83
Mother_GastroMother tuber of Gastrodia elata 21.13
Mother_JuvenMother tuber of Juvenile 23.27