Gene detail

Detail information of GWHGAAEX014680/evm.TU.scaffold_60.114

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2236	1.00E-62	Uncharacterized conserved protein
nr	gi\|743761872\|ref\|XP_010905257.1\|	2.61E-75	PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Elaeis guineensis]
trEMBL	tr\|M0TZN3\|M0TZN3_MUSAM	7.00E-73	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P12240_001}
TAIR	AT1G03530	1.00E-62	nuclear assembly factor 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000061	3763298	3792051	-

Transcript Sequence
>GWHTAAEX014680 AAAATAGCAAAACCCTTAAAAAATAGTAAGGGCGCTGCTGAATTCAGCCGCCCAACCCTTTACCAGCTTCCTTATTCGACGTTCCTCTTCTCCATTCAGTGCTGGGAGCACTTAACCTCACCTCTTCCTCTCAACGCCGCTCCTTCAACTCGCCTCTTACCTCTTTTTGAAGATTCACCGATCCTCTGCAATAGAGAATCGACCGCAGGCAAGAAATCCCCGATCTTCTTCACAGGAGACGCCGATCTTTTCTCATTTGAATCCTCGAAGTGCAGGTGACTTTCGTCAAGTTCCACCATCGCATGCAGCACTTCCTGATTCTGTATATTCAATTTCTGATATGCTGTCACACAAGTAAAGCATTGTTTCAGGGTGCTGGAGCCCTGCTGACTCAAAGGATGAAAACCCACTCCCTTTTTGATGACTTAGATCCCTTGATGGAGTGGCTTGCCCACCCAGACTGCGTGCAGTTGCAAAATCCCAGCGACTCTAGCAACTCCGAGCTTCATGATGGCGAATTAGAGCAGAAAAATCAGGAAGTGGAATCTTCCATTGATGCGAAGATGGAGAAAGTCAGCCTAGTTGATAATTTAAATGAAGGGAAAGGAAAAGTGCGATTGGATGATGGAGGTGGAAATAATGATGAAAACTTGAAGTCTGAGGTGGATGCTTTGAATGATGATTTACCAAACAAGGAGCGAGCTTATGAAGAAGCTAGTGACCATGCAAAGGACTCTTCAAGTGATGAGTCCAGTTCTGATGACTCTATGAGCGACACCAACTCAGTTTCAGGCAGGGACGATGAAGAGGAAGATGATAGTGGGAGAAAAGGGAGAGAGGGCGCTGAAGAGGTTGAAGAAGGTGAGCTGAGCGAATTTGGTGATGCTAATGGTATTGATTTTTCTGGTGATGAGGAAGAAATGGTAAGTTCAAAAGGTCCCATCAGATCAAAGCATGAGGTGGAGGATCTTCCTCCAGTTCCTATGGTTGAAGCCTTTCTCCAGCCACATCACCAGTTGTTACCCGTGGGAATTATTTCATCGATAATGCACAATAGAGTTATTGTCGAGGGTTCTGCCAGGCACAACCCTCTTGACGAGGGTTCAATCCTTTGGGTGACAGATACCCGGTTACCGTTAGGCCTGATAGATGAACTATTTGGCCCCGTCAAGAGCCCCTACTATGTGGTCAGGTACAACGCCGAATACGAGGTGCCTGCAGGAATCAAAGCCGGTATGGCCGTCTCTTTTGTGGCAGAATTCGCCTGCCAAATCCTGAATGACAAGGAACTGTACAAGAAAGGCTACGATGCCTCCGCCGAGAATGATGAGGAAGCTGTTAATGAAATCGAGTTCTCTGATGATGAAAAAGAATCAGAGTACAGGAAATCTATGCGGCAGGGAAAGAGAGCCATTAACAACAATCAGAGAGCAGTTATTAAGAAAGAAGTTAAAACTGGCTCGAGAAATAAACCAACCTTCCGCAGCAAGCCGTCTCCTCTGCAACTGCTGCCGCCCCTACAGCCGCCGCAGTTGCTTCCTTCATCTCTGCCGCCGCCGCCGCCGCCGCTGCTGCAGCCACTCCCTCCGCCGCCGTCACTCCCTCTGCCGCTGCAGCCGCCTCAGTCGCTGCCTCCATCTCTACTGCCGCCATCTCTGCCTTCGTCTCTACAGCAGCCGTCCCTGCCCCCGTCTCTAACGCAGCTGTCGCTGCCACGACCTCCATCCGAATTTTCTCTTCAGCCATGGAACAATGCTGGTTTTCAAGGCAGCGCCTCGGTGCAATATCAGAATGTCTTTTTGAGAAATCTGGTTAGCATGATGGCTCTTCAGCAGGTAGTGATGCAACAGCAACAACAACAGCAACAACAGCAACAACAACAGCAACAACAGCAACAACAGCAACACCAGCAACAGCAACACCAGCAACACCAGCAACAACAACACCAGCAACAACAACAACAGCAACACCAGCAACAACAACACCAGCAACAGCAACAACAGCTGCAACAGCAACAATTTATTCCTCAGCAAGGGAGCAATTTCTTACCATTATTACAGAATAATTTTGCCATGCCGTTTGCTCCATATGTCAGTAATGGGCCCAGGGCACCTGTCTTGGGCGGGACCCATATACAACAGGGTGGCTTATCTATGCTGCCATTTGTTAACGTGCCTGCCGGATCTTCGGCTACTTTGCCTTTTGCTTCTCCTTCCGTTCAGTTTAATGCTACTGAGAGTTCTTCGAATTTAGTGCATTTTAGGCCTCGTGGCAGTGGCGGTCCTTATCGGGGAGGTGGAAGCCGCCGCATGGGCCGAGGAGGTTGCCGGCCCAACTGGTAGAAAAGACACCTTCACTAGTACTTGTGGTTCTTACATTGAATCTGCTACTTCAGTGTTTTCCTTTAATTTTTGTAGGCAAGTTCCCTTGTCTCTATTAGTTTTGTGATGCATTAGAGCGGCCTGTAGAGGCTTTATCTAAGCTGATCTTTCTACTTAATTGTTAAGCTTAATTTGATTTTGTTTGGAATTCTTTTTTCATGATAATTAATTATGTTTATTTTAATGCTGTTTGTTTGAAGATCTTTCGATTGTTATTAACACCCAATATTTATTATGAT

Network for GWHGAAEX014680

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04410.13	Gar1	221	367	4.50E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0001522	Biological Process	pseudouridine synthesis
GO:0042254	Biological Process	ribosome biogenesis

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.260
SRP064423	SRR2545915	Juvenile tuber	30.950
SRP108465	SRR5643513	five period of Gastrodia elata	22.460
	SRR5643514	five period of Gastrodia elata	20.250
	SRR5643515	five period of Gastrodia elata	21.840
	SRR5643524	five period of Gastrodia elata	21.860
	SRR5643525	five period of Gastrodia elata	16.200
	SRR5643528	five period of Gastrodia elata	15.190
	SRR5643658	five period of Gastrodia elata	15.550
	SRR5643659	five period of Gastrodia elata	35.450
	SRR5643660	five period of Gastrodia elata	36.100
	SRR5643661	five period of Gastrodia elata	32.220
	SRR5643662	five period of Gastrodia elata	36.220
	SRR5643663	five period of Gastrodia elata	36.030
	SRR5643664	five period of Gastrodia elata	35.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.840
SRP279888	Gastro	Gastrodia elata tuber	32.59
	Juven	Juvenile tuber	36.44
	Mother_Gastro	Mother tuber of Gastrodia elata	13.00
	Mother_Juven	Mother tuber of Juvenile	20.36