Detail information of GWHGAAEX014681/evm.TU.scaffold_60.116
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383762135|ref|YP_005441117.1| | 3.00E-06 | putative protein phosphatase [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| KOG | KOG1716 | 0 | Dual specificity phosphatase |
| nr | gi|743842115|ref|XP_010937716.1| | 0 | PREDICTED: protein-tyrosine-phosphatase MKP1-like [Elaeis guineensis] |
| Swissprot | tr|Q9C5S1|MKP1_ARATH | 0 | Protein-tyrosine-phosphatase MKP1 |
| trEMBL | tr|K7VY34|K7VY34_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G005350_P01} |
| TAIR | AT3G55270 | 0 | mitogen-activated protein kinase phosphatase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000061 | 3864272 | 3890914 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014681
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00782.19 | DSPc | 149 | 279 | 1.60E-26 |
| PF00626.21 | Gelsolin | 320 | 381 | 0.00011 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006470 | Biological Process | protein dephosphorylation |
| GO:0016311 | Biological Process | dephosphorylation |
| GO:0004725 | Molecular Function | protein tyrosine phosphatase activity |
| GO:0016791 | Molecular Function | phosphatase activity |
| GO:0051015 | Molecular Function | actin filament binding |
| GO:0008138 | Molecular Function | protein tyrosine/serine/threonine phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 35.140 |
| SRR2545915 | Juvenile tuber | 34.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.140 |
| SRR5643514 | five period of Gastrodia elata | 28.690 | |
| SRR5643515 | five period of Gastrodia elata | 37.240 | |
| SRR5643524 | five period of Gastrodia elata | 35.520 | |
| SRR5643525 | five period of Gastrodia elata | 27.990 | |
| SRR5643528 | five period of Gastrodia elata | 47.780 | |
| SRR5643658 | five period of Gastrodia elata | 27.750 | |
| SRR5643659 | five period of Gastrodia elata | 33.240 | |
| SRR5643660 | five period of Gastrodia elata | 30.440 | |
| SRR5643661 | five period of Gastrodia elata | 27.800 | |
| SRR5643662 | five period of Gastrodia elata | 33.520 | |
| SRR5643663 | five period of Gastrodia elata | 25.070 | |
| SRR5643664 | five period of Gastrodia elata | 24.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.04 |
| Juven | Juvenile tuber | 36.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 65.96 | |
| Mother_Juven | Mother tuber of Juvenile | 161.14 |