Gene detail

Detail information of GWHGAAEX014684/evm.TU.scaffold_60.121

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743842146\|ref\|XP_010937726.1\|	8.80E-143	PREDICTED: uncharacterized protein LOC105057004 [Elaeis guineensis]
trEMBL	tr\|M0TCB3\|M0TCB3_MUSAM	1.00E-89	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P33200_001}
TAIR	AT3G53540	4.00E-36	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000061	4180732	4188946	+

Transcript Sequence
>GWHTAAEX014684 AGAGAGAGAGAGAGAGAGAGATTGCACCATCAACGACTCCCTCATTTAATGCATCGATCTCTTTTCACTTTCTTTGGATCTTTCCGCATTTCTACTCCTCTCGCTGCAATATTCATTCTTCCTCCACACCTCCTTTGGGCATTTCTTGTCTCCCGGTGAGCTTTAGAAATAGGTTTTAGATTCTGCACTGAGGCGAGATGCAACGATCGCGGAGCAGAGAGAGGGATTGTGGCGCCTCTGTTTCGAGGGCTGACTCGGCCTTCGCTTGCGCTGAAGGTAATTCTCATTTCAAAAGTCGAAATAATCTGTTAAGAACTGAATTTGATTCAAATTGTGAACATGGTTCATCTGTAGGGGTAAATTCTATAACCCTCGAGTTTAAGAGGAGCAGTTCTAAGAAGGGCAGTGGAATGCCAATTAAGACACTGATAAAAGAAGAAATGCCAAGTGAAAAGCATATAAAACGGCCATCAACAAATTTGATTGCTCGACTTATGGGCCTTGATACCATGCCTTCTCCTAAGGTCCTAAAGCCACTGAAGGAAGTAAGGAGTTCTTCTAAAGATTTTCAAGATAAGGCCAGTTTTAATGACTGTTTTCTTCCATCTATCAATGGAGAGAATCAAGAGTTTAAAGATGTCTTTGAGGTTGTGGAAGTTCCAGAGGTTGAGAAGCAGAAGGATCGAATTGTTAAGAAAGGAATATCTAGCTTGAGAGGGCATGAGATTGACAAGGCATTTACTTGGCAGAATTTCGTTGATGCAACAAGCCTTTCAACTGATGAAATGTCTCAAAGGTGCAAGGAACTTGATGATGCAAAGAGCTTAGATTCAAATTTGAACCTTAATCTGCAATTTCTTCATGAACCATCAAAACATCTTCGCGAGCAGAATCACTTACCGTCACCCCCTCATGAAATCTATCCCTCTATTCTCATGGCATCTAATGGCAGTCCAACAAGCTGCCAATCTTCTTTCAGATCAGAAAAGAATGTTGATAGATTCATTAATCTGCGTACATTCCAGTCGCAATCTTTTAGGAAACTTGAACCTAAAAAATATTGTCACCCATCAAGAGAGCATTTGTGTTCTCTACTGAAAAAGTTGTCAGACTCAAGATCTAGTGAGAAGGATGAATATTGTGCTCAGCCTACTCAGATTGTAATTCTTAAACCAAATCGTGACAAGGCTCGGAGGGCAGAAAGAAGTACCCTGTCCATAAATTCATTGAATAGTCGTCATGATAATCTTTCATATGATTTAAAATTTCCATTTGATGAGATTATGGAGTTAAATGAAGAAAGTACTCATGAAAGCTTTCCTTACACTACAGAAATTATGCGACAGAAGATAAAGGGATCTAGGGAAATTTCTAAAAGGGTTGCAAAACAAATAAGGAATACTTTGGCTTCTGAAAGAAAGAAGATTTCTGTTGCAAAATTAAATGACTGTGAAACGAATGATGAACCATGTACTACATCGAACATCAAAAACGGGAACAAATCTCAGACTAAGGTCATGGCTACCACTAATTTTTGTATTTATGGTGATAACTCCAATCGTTCCTCTTGTTCAACTGGGTCATCAATTACTAGAGAGGCTAGACATTGCCTCTCTGAAAGATGGAAGTTAACCAATCATTTTCAGGAAATGGACTTTCCAAACGGTTCAAGTACTTTGGCTGAGATGCTTGCATTTTCTGATAACGAGACACATAAGATGACTCTAGATACAATAGCTGTTAAGAATGCTTTAGAAAGAAATTTGGTTAGAAAAGATTTTCTTGAGCCTCGAAATCTTCCTCTGGGAATCAGCAGCAAGGATGGTTGGAAGGGTGATTTCTCTAGGAGGTTACCAAGGTCTAAATCTCTTCCTGCTTCATCTTTAATTCATGAAAATCCCCAATGGAATTCGAGAATTCAACCAGGCAAAATTATTGACAGACTTAAGCACAAGAAGATAGAAGATAGAAGTCAGTGGATACCCCTTGATGGTGATTTCATCAGGAAAAAAGATACTTCACGTAGAAACCTGAAATATGTCAATAAAATAGACAAAGTGTTATCAGATAAAGAGGAAATTACATTAGTTGAACGGGAGATTCACGTGAGTTCCCAAAAGCTCAAAAACAGTAGTGATTTGGGGAATATTTTTGGAAAACATCAGGCAAATATTGAGCTTCCTGATGATTCTATCGTTGAAAAATGGGATAAGCTCAACAATTTATCAGTTTCTCAAAGCAACGCTGACAATTCTGTTTTAACAGACGGTGAAAATGGATATAAGAGCCTCCAGGAGTTTGCAAAAGAAAAAAACAATATAAAACTTCCAGAGTGTGATAAGCAAATGACTGAATCAAAGGATGATGGAGATCAACTTCCAGCTACTACTGCTCACTGCAATATATCCTTCGATCCAGTTTGTTCTGGAAGCTACAAGGACACTCCTGATCAGCCAAGCCCAGTTTCTGTTTTGGAGGTGCCATTTGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAACAATTCAGTGCTGGCTGCTTTGAAAAGATCAGTGCAGATCTTCAGGAGCTTCGTATGCAGCTTCGACTTCTGAAGCAAGGGTCATCCGACATTTGCGCGCAGCGAGGTGATGAGGACAGTTCTGGGGACTCCTTACATGACGATCCCCATTCCTCTGACATTCTTCAAGCATTCAGAGATGAAGAAGAGAGGGACTACTCATATGTACTGGATATCCTCATTAATGGTGACATTCTTAAAACCGAGATTGATGGAATCTTTGCTGAACGCCACTTGTCCCAATGCCCAATCAGCCATCAAGTGTTTGATAAGCTCGAGAAGAAATATAAATCGCTTGACTCTTGGTCAAGGACGGATCGAATGCTGTTATTTGATCTCGCAAATTCAACACTGGTGGATATCATCGAAATGAAGAGTCCCCGGCAATTGAAAATCATCCGGGATGGCCTCATTGATGGCGTATGGCAAGCAGTGGCTAAGCAAATAAAAGACACAGGAAAGAGTTTGACGGCGGAGAATCTCGACGAGTTAAGGTGGGCTGATTTTGGGGAGGATGCTAAGGAGCTGATTGGAAGCGAAGTGGAGAAGATGCTGGTGGATGATCTTTTCGATGAGCTTGCTGCTGATTGTAATAGGTAAATCAAGATCTCATTTGACAGAAAGTTTTTAAGCTCCTCTTCTGCAATGGTAAATTTGTATAGTATGCCAATATGCAAGGGAACTTTAGTGATACTTTCTATCTATCTGTAAAAGGTTTTAGTGATGGAAAAGAAAGATGTTTATTTGTCTGAGTTATGGCTTGTGTGTTGTATGGAAATTGAAGACTTTTGCCTGAGCTATGTTTATTTCCTTGGGAGCAATTCTGGCCCACTTAAGACTAGGGGGGTGTATGCCAGCATTCAACCAAATTCTCCTATTTTATATTTATGAAATTAACTTTGAAATATATCCCT

Network for GWHGAAEX014684

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14383.5	VARLMGL	94	109	2.50E-05
PF12552.7	DUF3741	184	225	1.60E-05
PF14309.5	DUF4378	840	980	1.60E-24

Protein Sequence

>GWHPAAEX014684
MQRSRSRERDCGASVSRADSAFACAEGNSHFKSRNNLLRTEFDSNCEHGSSVGVNSITLEFKRSSSKKGSGMPIKTLIKEEMPSEKHIKRPSTNLIARLMGLDTMPSPKVLKPLKEVRSSSKDFQDKASFNDCFLPSINGENQEFKDVFEVVEVPEVEKQKDRIVKKGISSLRGHEIDKAFTWQNFVDATSLSTDEMSQRCKELDDAKSLDSNLNLNLQFLHEPSKHLREQNHLPSPPHEIYPSILMASNGSPTSCQSSFRSEKNVDRFINLRTFQSQSFRKLEPKKYCHPSREHLCSLLKKLSDSRSSEKDEYCAQPTQIVILKPNRDKARRAERSTLSINSLNSRHDNLSYDLKFPFDEIMELNEESTHESFPYTTEIMRQKIKGSREISKRVAKQIRNTLASERKKISVAKLNDCETNDEPCTTSNIKNGNKSQTKVMATTNFCIYGDNSNRSSCSTGSSITREARHCLSERWKLTNHFQEMDFPNGSSTLAEMLAFSDNETHKMTLDTIAVKNALERNLVRKDFLEPRNLPLGISSKDGWKGDFSRRLPRSKSLPASSLIHENPQWNSRIQPGKIIDRLKHKKIEDRSQWIPLDGDFIRKKDTSRRNLKYVNKIDKVLSDKEEITLVEREIHVSSQKLKNSSDLGNIFGKHQANIELPDDSIVEKWDKLNNLSVSQSNADNSVLTDGENGYKSLQEFAKEKNNIKLPECDKQMTESKDDGDQLPATTAHCNISFDPVCSGSYKDTPDQPSPVSVLEVPFEEEEEGEEEEEEQFSAGCFEKISADLQELRMQLRLLKQGSSDICAQRGDEDSSGDSLHDDPHSSDILQAFRDEEERDYSYVLDILINGDILKTEIDGIFAERHLSQCPISHQVFDKLEKKYKSLDSWSRTDRMLLFDLANSTLVDIIEMKSPRQLKIIRDGLIDGVWQAVAKQIKDTGKSLTAENLDELRWADFGEDAKELIGSEVEKMLVDDLFDELAADCNR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.970
SRP064423	SRR2545915	Juvenile tuber	90.660
SRP108465	SRR5643513	five period of Gastrodia elata	11.670
	SRR5643514	five period of Gastrodia elata	14.770
	SRR5643515	five period of Gastrodia elata	11.850
	SRR5643524	five period of Gastrodia elata	13.440
	SRR5643525	five period of Gastrodia elata	5.590
	SRR5643528	five period of Gastrodia elata	8.500
	SRR5643658	five period of Gastrodia elata	7.620
	SRR5643659	five period of Gastrodia elata	10.030
	SRR5643660	five period of Gastrodia elata	13.170
	SRR5643661	five period of Gastrodia elata	10.680
	SRR5643662	five period of Gastrodia elata	12.720
	SRR5643663	five period of Gastrodia elata	11.130
	SRR5643664	five period of Gastrodia elata	13.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.360
SRP279888	Gastro	Gastrodia elata tuber	10.09
	Juven	Juvenile tuber	21.09
	Mother_Gastro	Mother tuber of Gastrodia elata	34.98
	Mother_Juven	Mother tuber of Juvenile	23.28