Gene detail

Detail information of GWHGAAEX014696/evm.TU.scaffold_60.135

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1895	mRNA cleavage and polyadenylation factor II complex, subunit PTA1
nr	gi\|743757314\|ref\|XP_010921448.1\|	PREDICTED: uncharacterized protein LOC105045001 isoform X1 [Elaeis guineensis]
trEMBL	tr\|A0A067KZC7\|A0A067KZC7_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP41537.1}
TAIR	AT1G27595	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000061	4725736	4827395	-

Transcript Sequence
>GWHTAAEX014696 ATCAAACTAGAAAGGGCATCAAACTCTATAGGTGCTGGGAAACCCTATAACCACCGGCGTTTCCCTCCCCGGCTTAGCTCTGGCTTTACATTTTTTGCCTAAGGCTAAGAAGCATCGGATTGCTATCCTTCCACTTTTTCTGTACAGACAACTCTCACTTGATCTCTTTCTTCCTTTTTACTGCTGAGGCAACAGGAGTTGGAGCGGGAGCTTTACGCCATCATCTCTGGACTTCTTACTCTTGAATTAGGATTCTCCCTCTTCTATATGCGGAGGGAAAAGAAATCGCCGAGGGTAAATTTTCGTGTTAGCTTTTCAGATTGATGGAGTGGAGTTTGAGATTGCGGAAAGAAAGCGTTTTGTTTGTGGTTGTACATGAGGATGGGTTCTAAACTTGTGGAAACTCAACATAGGGAAGCTCAACTTTACATTAGGGCTCTGGATAGAGAAGATCTTAATGATGGAATGGGTCCAACAAATCATAGAGTGTACTTGGAATTTGAGAGGTTGTTGAAGGAGCTTGGTCGGAAAGTCACGGAAGATTCACTAGTCTTGTTGCCAAAATTGCTATCGTATTTAAAACATGATGATCCTATTGTTGTTAAACAATCTATTACTACTGGAACAAGTTTATTTTGTGCTGTTCTTGTTGAGATAGCAGTTCAGCTTAACAAGTACAACAGGCTTGAAAGATGGCTCGAAAAATTGTGGTCTTGGATGCTTCAATTTAAGGATGCAGTTATTGGCATTGTTTTGGAGCCTGGGTCTGTCAGAGAAAAGATGCTTGCTGTAAAATTTTTTGAAACTTGTGTTTTAACTTTGACACCTGATGAGGATGCTGATGAAGTGTCATACGAAGAAGAAAGAGGGCGGGAGTTTAATGTTTCGTGGATACTGAATGATCATCCTATTTTTAATAGAGCTGCAATTTCTATTGAAGCAAACAATTCTCTTAAACTCTTACTTGATTTATTGCGCTCAGCTGATTCTTTTCCGGGTTCCTTAACAATCTCTATAATGACCTGTCTTTCTGCGATCGCAAGGAAAAGGCCTCTTCACTATGATTGCATTTTGGCAGCCTTACTTAGTTTTTCTCCAAATGGTCATTCTTTACCGGGCAGTCATGTTGCAAGTATTAAATATTCGCTGCGAACTGCTTTTTTAGGATTTTTGAAGTGTAATCATGTATCAGCTATTGAGTCCAGGGACAAGTTAGTGAGGTGGTTACGTTCCATGAATCCTGGGGATACAATTGAACAAGTTATTCGACAAGTTGAGAAAATGTCAAGAATGGAGCGCACTCTTCGAGATGTTCAAGTTAACAAGGATGATGATCTATCAGAACATGTGATAGCATCCAAGGACTCTGCTCGAATGAGATCTGGTACATTAAGTGATGATATCTCTTCAATTTCTGAGGAAATTCCACTTAAGAAAATGAAATTTAGCTCAACTTTCTTCACTGTTCAGCCTGCTGACAGAGCATCTAATTTTCTAGATACTCCAGATTCTGCAAGTAATTTCTCTGTGAAAGATGACTTATCCCCTGTTGAAAAGATGATTGGTATGATTGGTGCTTTAATAGCAGAAGGGGAAAGAGGTTCTGAGTCCCTTGAAGTGCTCATCTCAAATATTCATGCAGACCTTTTAGCTGATATAGTCCTAGAAACAATGAAACATTTGCCAAAGAATTTGTTTTTGTCAACTAAAATCAATGGGAGCTCGCATGTGAATTCTCAAATGTCCTTAAGAGGTTCTTTGCCACATGTAGGACCATTTTCTAGTACGATTAATGATCAATCTTCTTCATTTTCATCCCAATTTGAATCAACTAAATCAAGTTCTAGTGAAATCACTATGCCAGCTTTGGATACGCCTGTCCTTTCTAACATTCTTGCTGACTTTAAGCGTGACCCTAGACGAGATCCACGTCGCTCTGATCCACGTCTTGCTGCAGCACAAACTCAGCAATCTTTACCATTGAACTCTGAGAATGATAGTGACTCTAAAAATGAGCATTGTCAATCTACGAGTAATCTGACTTCTTCACCGGATAACAAGGCTGAATATCCTCCTTTTACAACAAAGAATGGGGACGAGCTTTTGGATAATACTGTTGATTCTGATGCTGTTGAACTAACTTCTGTTGATACTTTAGATGTTAATGATACGGTTATGGAAGCAGAACCCTCAGAGAGTCAAATATCTACCAAATCTCAACTTTCTTTTTTGCATGCTCTTGGCCAAGAACTAACAGCTTCTGTGCCTTCAGATGCTAGTTCAAATCAAACTGCTGATGCTAATCTGCTGGAATCTGATCAGAATTTTTCAACTGTCCCCATTACAGTAACTGAAGATACTTATTATGATTTACCTATTCATCAAGTTCATGTTGAGTTAACAACCGAGCAGATAAAAACATTATGCAAGTTGGCAATTGCAAGGATTTTTAAGAACTGCAAGAAAGTTTGTAGTGTTTCCAATGGTCAACAATGGTTACCTTTATTGGCTCGAATTGTTGCACAGAACGATGCTGATGGTGATATGGTTTCATTGTTGCAAAGTCATATCATTTCAGATTATGATCGTCAAAAGGGGCATGAGCTCTCAATGCTTGTGCTATACCACATACATGCAATTATGGTATCTGAATCAAATGAAAATTTCAGAATTGTTGCTAGTAAATATGAAAGATTTCTTCTTTCAATTGCCAAAGGCCTTCTTGATTCTCTTCCAGCTTCAGACAAATCCTTTAGTAGACTTCTTGGAGAAGCTCCATTTTTACCCGACTCTATATTGAGATTGTTGGATGATGTTTGCTTCACAAATGTTTTTGATCACTTTAAGAAAGATGTTTCTGATGGCGATCGTGCCACTCAGGTTCTGGGTACTTTGTGGAGTTTAATTTTGAGTCGTCCATCTATTCGTCTCGCTTGCTTGGAGATTACTTTGAAGTGTGCTGTTCATGCAAAAGAGGAAGTTAGAACAAAAGCTATCCGGCTGGTTGTAAATAAGCTCTACCCACTTCAATATGCGTCAGACTATATTGAGAAATTTGCTATAAAAATGCTGTTTTCTTCTGCCGATCATCAAGTTTCAGAAGCAGAATCCCAATGTACTGACTCTAGTGGTCAGAGAACAGAAGAAGGTAATCATGAATCGTTCATTGGCAGTTCCCAAAATTTTGAAAACAGGGTTCTTGAAAGTGAAAACATGATGGATGCCCCTAGTACTTCCCAAAATGTTGTGTTAATGTCCTCATCTCAAGCTCAGCAAAAAACTTCTTTGTTTTTTGCTCTATGTTCCAAGAAACCAAGTCTTTTCAGACTTGTTTTTGATATTTATGGAAGAGCGCCAAAGGCTGTTAAGCAGGTTATTCACCGGCATGTTCCCATTCTTCTTAGAAATCTAGGAGCATCATCAGTTGAACTACATGATATAATCTTTAATCCACCTGATGGATGTGAGAATCTAATAATTCTGGTGTTGCAAGTCATCACTGAAGAAGCAACAGCTGGTGCTGAGCTAATTGCTGCTGTTAAACATTTGTATGAGACAAGAATGAAGGATGCTGCTATTTTGATTCCAATACTTTCTTCTCTTTCAAAAGATGAGGTTTTGCCAATTTTTCCAAGGCTGGTTGATCTTCCAATGGAGAAATTCCAGGCTGCATTAGCTTGCATTCTTCAGGGATCAGCACATACAGGTCCAGCTTTAACACCAGTTGAAGTGCTAACTGCAATTCATGACATCAATCCTGATAAAGACGGGGTTGCCTTAAAGAAGATAACTGATGCTTGCACGGCTTGTTTTGAGCAGAGAACTGTTTTTACCCAGCAGGTCTTAGAAAAGTCGTTGAATAGCTTGGTTGACAAAACCCCTCTTCCTCTGCTTTTGATGAGAACGGTTATTCAAACAATTGATGCTTTCCCTATCATGGTTGATTTCATGATGGGAATTCTCGCTCGTCTTGTTAGCAGACAGATTTGGAAGATGCCAAAGTTATGGGTTGGATTCTTGAAATGTGTTTCTCAAACAATGCCGCATTCGTTTAATGTTCTGCTACAGCTGCCTATCGCACAGCTTGAGGGTGCCCTGAATAAATATCCTGAAATGAGAATCCCCCTGGCTAGTTATGCCAATCAGCCCAATGCTAGGAGTTCATTATCAAGGCAAACTCTTGGGATACTCGGCCTTAGCCACGAGCAACAGTGAGGTTCCTTGCATCATTTGTGGTCCACCGTAATGACTGTATATGGCAACAGAATGATGCTATGCCTTTTAAAGAATGCCTCAACTTTGCAATCCGAATCGACGACGATCGTGACTTGGCATTAGCTGAGTTGAGGCTTTAGATTAGCGTACAATGCATTCTTCTTTTGTATTTTTGTTTTCTAATTTCTTGTTGAGTTTAGAAATAGCTGTCATAATCCTTGTTCATCACAGGCCTAAATGATCTTACTGCTTAGTCTTAATAGGGTTAGGATTCAGAGCAATCAGAATGTTGTAAATCGAGTGTATGTCTGCAATTATTCATAAAGTTTATATGCTCATTGAGCACACTGATCTTATGTTAAAAGGAAGAAAAAAGAATTTGCGTTCTTTTTTTTAAAAAACATTGATCTTTGGTTATGATGAGTTTTGTT

Network for GWHGAAEX014696

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11935.7	DUF3453	72	290	1.30E-42
PF12295.7	Symplekin_C	1065	1243	1.20E-57

Protein Sequence

>GWHPAAEX014696
MRMGSKLVETQHREAQLYIRALDREDLNDGMGPTNHRVYLEFERLLKELGRKVTEDSLVLLPKLLSYLKHDDPIVVKQSITTGTSLFCAVLVEIAVQLNKYNRLERWLEKLWSWMLQFKDAVIGIVLEPGSVREKMLAVKFFETCVLTLTPDEDADEVSYEEERGREFNVSWILNDHPIFNRAAISIEANNSLKLLLDLLRSADSFPGSLTISIMTCLSAIARKRPLHYDCILAALLSFSPNGHSLPGSHVASIKYSLRTAFLGFLKCNHVSAIESRDKLVRWLRSMNPGDTIEQVIRQVEKMSRMERTLRDVQVNKDDDLSEHVIASKDSARMRSGTLSDDISSISEEIPLKKMKFSSTFFTVQPADRASNFLDTPDSASNFSVKDDLSPVEKMIGMIGALIAEGERGSESLEVLISNIHADLLADIVLETMKHLPKNLFLSTKINGSSHVNSQMSLRGSLPHVGPFSSTINDQSSSFSSQFESTKSSSSEITMPALDTPVLSNILADFKRDPRRDPRRSDPRLAAAQTQQSLPLNSENDSDSKNEHCQSTSNLTSSPDNKAEYPPFTTKNGDELLDNTVDSDAVELTSVDTLDVNDTVMEAEPSESQISTKSQLSFLHALGQELTASVPSDASSNQTADANLLESDQNFSTVPITVTEDTYYDLPIHQVHVELTTEQIKTLCKLAIARIFKNCKKVCSVSNGQQWLPLLARIVAQNDADGDMVSLLQSHIISDYDRQKGHELSMLVLYHIHAIMVSESNENFRIVASKYERFLLSIAKGLLDSLPASDKSFSRLLGEAPFLPDSILRLLDDVCFTNVFDHFKKDVSDGDRATQVLGTLWSLILSRPSIRLACLEITLKCAVHAKEEVRTKAIRLVVNKLYPLQYASDYIEKFAIKMLFSSADHQVSEAESQCTDSSGQRTEEGNHESFIGSSQNFENRVLESENMMDAPSTSQNVVLMSSSQAQQKTSLFFALCSKKPSLFRLVFDIYGRAPKAVKQVIHRHVPILLRNLGASSVELHDIIFNPPDGCENLIILVLQVITEEATAGAELIAAVKHLYETRMKDAAILIPILSSLSKDEVLPIFPRLVDLPMEKFQAALACILQGSAHTGPALTPVEVLTAIHDINPDKDGVALKKITDACTACFEQRTVFTQQVLEKSLNSLVDKTPLPLLLMRTVIQTIDAFPIMVDFMMGILARLVSRQIWKMPKLWVGFLKCVSQTMPHSFNVLLQLPIAQLEGALNKYPEMRIPLASYANQPNARSSLSRQTLGILGLSHEQQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06100	SYMPK	mRNA surveillance pathway	map03015
K06100	SYMPK	Tight junction	map04530

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.230
SRP064423	SRR2545915	Juvenile tuber	28.960
SRP108465	SRR5643513	five period of Gastrodia elata	14.700
	SRR5643514	five period of Gastrodia elata	14.850
	SRR5643515	five period of Gastrodia elata	16.200
	SRR5643524	five period of Gastrodia elata	15.140
	SRR5643525	five period of Gastrodia elata	15.720
	SRR5643528	five period of Gastrodia elata	15.510
	SRR5643658	five period of Gastrodia elata	13.880
	SRR5643659	five period of Gastrodia elata	16.540
	SRR5643660	five period of Gastrodia elata	16.660
	SRR5643661	five period of Gastrodia elata	14.180
	SRR5643662	five period of Gastrodia elata	14.740
	SRR5643663	five period of Gastrodia elata	15.660
	SRR5643664	five period of Gastrodia elata	14.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.020
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.110
SRP279888	Gastro	Gastrodia elata tuber	18.27
	Juven	Juvenile tuber	25.62
	Mother_Gastro	Mother tuber of Gastrodia elata	20.13
	Mother_Juven	Mother tuber of Juvenile	22.01