Gene detail

Detail information of GWHGAAEX014720/evm.TU.scaffold_61.20

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|507524157\|ref\|YP_008045770.1\|	phosphoenolpyruvate carboxylase [Spiribacter salinus M19-40]
nr	gi\|2266947\|gb\|AAB80714.1\|	phosphoenolpyruvate carboxylase 1 [Gossypium hirsutum]
Swissprot	tr\|Q84VW9\|CAPP3_ARATH	Phosphoenolpyruvate carboxylase 3
trEMBL	tr\|O23946\|O23946_GOSHI	Phosphoenolpyruvate carboxylase 1 {ECO:0000313\|EMBL:AAB80714.1}
TAIR	AT3G14940	phosphoenolpyruvate carboxylase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000058	835950	853400	-

Transcript Sequence
>GWHTAAEX014720 GTACTTTTCGATCATTTTAAAAAAAGGAAAACAAAACACCATGACGCCGCTGCATGCGGTGGCGCCACGCTGCGGCCCGGTCCAATAAACATAAGCCAGTACTTCCGGCTGAAAAAGCAACATAAAAGGCCACACCGTACCAGCACCACAAATCGCTACACGATTCGCGGGAGGGATCAATGGATTCTGCTGGCATATTCCAATTTCTGAGCTTCCTGTTCCTCTGGCAGGCAAGTAGAATTTCGTTTTCTGCCGCGAGATTTCTTCTTGGACGAGACTTTTATGCGAGTTGAACTTCTTCTAATGGCGAATAAAGTTGCTAAGTAGCGATTCTTTCTCTATAAATTGAGAGCGAATGCCATCTACTGTGCCCTAGGTTCAGCTTATTTCTGATCTTCCAGATCGGTAGCCTTAAGAGCGAAATAGGCCTTTTCTTGCGGGCTTGTAGCAAAGCACTTTTGCTCGTGCTACTGGTCTGTATTTTTTAGTAGGATTTAGGAAATTCAATTGGTTCATCTGATTTTGGAGGGAACAAGGTGAGAGATGTCGAAAGGTTCTTTGGTGAAGCTAGCTTCGATAGACGCCCAATTACGGCTGCTTGCGCCAGGGAAAGTGTCGGAGGATGACAAGCTTGTGGAATACGATGCTTTGCTCCTGGATCGTTTCCTCGATATAGTTCAGGATTTGCATGGAGAGGACATTAGAGAGACGGTGCAAGAGTTGTATGAATTATCTGCAGAATATGAGCGCAAGCATGATCCCAACAAGCTAGATGAACTGGGGAGTGTGCTGACAAGCCTGGACCCAGGGGACTCTATTGTAGTTGCAAGTTCATTTTCCCACATGCTTAATTTAGCAAATTTGGCAGAAGAAGTTCAGATAGCACATCGAAGGAGAATTAAGCTCAAAAAGGGGGATTTTGCTGATGAGGCTTCTGCCACTACTGAATCAGATGCTGAGGAAACTTTCAAAAGACTTGTTGGGCAGCTTAAAAAGACCCCGCAGGAAGTTTTTGATGCTCTTAAAAATCAAACTGTTGATCTGGTTTTGACTGCTCATCCAACTCAGTCTATTAGAAGATCTCTTCTTCAAAAGCATGGAAGGATAAGGAACTGTTTAACTCAGTTGTATGCCAAAGACATTACCCCTGATGATAAGCAGGAGCTTGATGAGGCCCTCCATAGAGAGATTCAAGCTGCCTTTAGAACGGATGAAATCCGAAGAACTCCACCCACACCACAAGACGAAATGCGTGCGGGGATGAGTTACTTCCACGAAACGATATGGAAAGGTGTTCCCAAGTTTCTACGTCGAGTTGACACCGCCTTGAAAAATATTGGGATAAATGAACGTGTTCCATACAACGCTCCTCTTATTCAGTTTTCTTCGTGGATGGGTGGAGATCGCGATGGCAATCCTAGAGTGACACCAGAGGTGACAAGGGATGTTTGCTTATTGGCTCGAATGATGGCTGCAAACCTATACTTTTCCCAGATTGAAGATCTAATGTTTGAGTTGTCTATGTGGCGATGCAGTGATGAGCTTAGATTAAAAGCTGATGAGCTGCATCTCTCCACGAAGAAAGATGCAAAACACTATATAGAGTTCTGGAAGAAGGTTCCTCCAAACGAACCGTATCGTGTTATTCTCGGTGATGTGAGAGATAAGCTATACCATACTCAAGAGAGGGCACGGCAGTTGTTGTCAAATGGCATTTCTGATATTCCTGAAGAGGAAACTTTTACCAATATTGACCAGTTTCTGGAGCCCTTGGAGTTGTGCTATAGATCACTTTGTGCTTGTGGCGATAGCCCCATTGCTGATGGAAGCCTTCTGGACTTTTTGCGCCAAGTATCCACCTTCGGCTTGTCTCTTGTCAGGCTTGATATACGGCAAGAATCTGACAAGCACACTGATGTTATTGATGCCATTACAAAACATCTTGAAATTGGCTCTTATCGTGAGTGGCCCGAGGAAAAGCGCCAAGAATGGCTACTATCCGAGCTAGGCGGAAAACGGCCTTTATTTGGTTCCGATCTTCCCAAAACCGAAGAAATTGCTGATGTATTAGACACATTCCATGTGCTTGCTGAGCTTCCTTCGGATAGCTTTGGTGCTTATATCATATCAATGGCGACTGCTCCGTCTGATGTTCTGGCTGTTGAGCTACTGCAGAGGGAGTGCCATGTGAAGAAGCCTTTGAGAGTGGTGCCGCTCTTTGAGAAACTTGCTGATCTTGAGGCAGCCCCCGCAGCCGTAGCCCGACTCTTTTCTATAGATTGGTATAGGAATCGGATCAATGGAAAGCAGGAGGTTATGATCGGATATTCAGATTCTGGCAAGGATGCTGGCCGTCTGTCCGCAGCCTGGCAGATGTATAAAGCTCAAGAAGAGCTTGTGAAAGTGGCTAAAGAATATGGAGTGAAGTTGACTATGTTCCATGGTAGGGGCGGCACAGTTGGGAGAGGTGGCGGTCCCACTCATCTTGCCATACTGTCTCAGCCTCCCGACACCATTCATGGCTCGCTTCGTGTTACGGTGCAGGGTGAGGTCATTGAGCAGTCTTTCGGAGAAGAGCATTTGTGCTTTAGGACACTCCAACGTTTTACTACCGCCACTCTAGAACATGGGATGCATCCCCCAATCTCCCCCAAGCCCGAATGGCGTGCTATGATGGATGAAATGGCTATTGTGGCCACAAAGGAGTATAGATCTGTGGTCTTCCACAAAGAACGTTTCGTTGAATATTTTCGCCTAGCGACACCTGAACTGGAGTATGGTAGAATGAATATCGGAAGCCGGCCATCAAAGAGGAGGCCCAGTGGAGGAATAGAGAGTCTTCGTGCAATCCCGTGGATCTTCGCTTGGACACAAACGAGATTCCACCTTCCTGTGTGGCTCGGATTCGGCGCCGCTTTCAAGTACGTCATCGAAAAGGACATCAGGAACATTCATATTTTACGAGAGATGTACAACGAGTGGCCATTTTTTAGGGTCACTATCGATTTGATCGAGATGGTTTTTACAAAAGGAAGCCCGGGAATCACGGCTTTGTATGATAAATTACTGGTGTCCTCCGACTTGCTGCCATTTGGAGAGCAGCTGAGAGCCAACTATGAAGAAACAAAACGCCTTCTTCTGCAGGTGGCTGGCCACAAAGATCTATTGGAAGGAGATCCCTACTTGAAACAGAGGCTGAGGCTCAGAGAACCCTACATAACGACCCTGAATGTGTGCCAAGCTTTCACGCTGAGGAGGATCAGAGATCCAAACTATCATGTCACCGCAAGGCCTCACCTATCCAAGGAGGTGTTGAAGTCCAACAAATCCGCTGCTGAACTGGTGAAGCTCAACCCCACCAGCGAGTACGCTCCCGGCCTCGAAGACACCATCATCTTAACCATGAAGGGCATAGCAGCCGGCATGCAGAACACGGGTTAAAGTTTATTCTTCATCATGCCATATAAGTTTCATTTAAGGTGTATTTACCATGTTGCATTTTACTTATATATCTGTATAAAATGACGCTATGATGCTTCTCTTGTTAGTGTCCAAGTAGTTAAATTTGTAAGGCTGTGAGATAGATACAAGTTGGGGCTGTAGGATAAGTTTCCATGCGAAGTTGCGTTATAATTTGAATAAGTTTTGATTTTCTTTGGAAAGTGCCTAGCTGTATCTCAATTGCATAAACATACATATTATTCTTGATATAAATTCGCTAGATACATCATTACTTAACAAAGCAAATATATGATTTGGAACTTAGGACTTATTTTTGGGTAGTATTAAGCTATGATTGGG

Network for GWHGAAEX014720

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00311.16	PEPcase	163	965	9.50E-301

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01595	ppc	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710
		Carbon fixation pathways in prokaryotes	map00720
		Methane metabolism	map00680

Gene Ontology

GO term	Ontology	Name
GO:0006099	Biological Process	tricarboxylic acid cycle
GO:0015977	Biological Process	carbon fixation
GO:0008964	Molecular Function	phosphoenolpyruvate carboxylase activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	102.390
SRP064423	SRR2545915	Juvenile tuber	108.390
SRP108465	SRR5643513	five period of Gastrodia elata	77.180
	SRR5643514	five period of Gastrodia elata	88.690
	SRR5643515	five period of Gastrodia elata	83.800
	SRR5643524	five period of Gastrodia elata	90.340
	SRR5643525	five period of Gastrodia elata	131.170
	SRR5643528	five period of Gastrodia elata	172.400
	SRR5643658	five period of Gastrodia elata	119.710
	SRR5643659	five period of Gastrodia elata	104.860
	SRR5643660	five period of Gastrodia elata	112.370
	SRR5643661	five period of Gastrodia elata	108.520
	SRR5643662	five period of Gastrodia elata	146.280
	SRR5643663	five period of Gastrodia elata	132.890
	SRR5643664	five period of Gastrodia elata	125.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	78.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	74.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	82.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	76.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	75.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	94.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	93.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	85.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	114.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	99.330
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	95.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	95.360
SRP279888	Gastro	Gastrodia elata tuber	108.70
	Juven	Juvenile tuber	118.28
	Mother_Gastro	Mother tuber of Gastrodia elata	175.31
	Mother_Juven	Mother tuber of Juvenile	101.96