Detail information of GWHGAAEX014726/evm.TU.scaffold_61.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|271963572|ref|YP_003337768.1| | 8.00E-109 | glutamate--ammonia ligase [Streptosporangium roseum DSM 43021] |
| KOG | KOG0683 | 0 | Glutamine synthetase |
| nr | gi|672892578|gb|AIK03054.1| | 0 | glutamine synthetase [Eichhornia crassipes] |
| Swissprot | tr|P14656|GLN11_ORYSJ | 0 | Glutamine synthetase cytosolic isozyme 1-1 |
| trEMBL | tr|A0A076U778|A0A076U778_EICCR | 0 | Glutamine synthetase {ECO:0000256|RuleBase:RU004356} |
| TAIR | AT1G66200 | 0 | glutamine synthase clone F11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000058 | 2269800 | 2277903 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014726
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03951.18 | Gln-synt_N | 23 | 97 | 7.20E-11 |
| PF00120.23 | Gln-synt_C | 108 | 254 | 3.70E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006807 | Biological Process | nitrogen compound metabolic process |
| GO:0006542 | Biological Process | glutamine biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004356 | Molecular Function | glutamate-ammonia ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 879.370 |
| SRR2545915 | Juvenile tuber | 765.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 489.620 |
| SRR5643514 | five period of Gastrodia elata | 680.370 | |
| SRR5643515 | five period of Gastrodia elata | 596.660 | |
| SRR5643524 | five period of Gastrodia elata | 694.220 | |
| SRR5643525 | five period of Gastrodia elata | 889.310 | |
| SRR5643528 | five period of Gastrodia elata | 851.910 | |
| SRR5643658 | five period of Gastrodia elata | 1186.770 | |
| SRR5643659 | five period of Gastrodia elata | 472.550 | |
| SRR5643660 | five period of Gastrodia elata | 512.230 | |
| SRR5643661 | five period of Gastrodia elata | 473.400 | |
| SRR5643662 | five period of Gastrodia elata | 410.770 | |
| SRR5643663 | five period of Gastrodia elata | 453.860 | |
| SRR5643664 | five period of Gastrodia elata | 466.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 634.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 655.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 687.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 599.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 684.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 709.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 649.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 669.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 942.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 954.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 887.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 887.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 677.20 |
| Juven | Juvenile tuber | 764.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 987.11 | |
| Mother_Juven | Mother tuber of Juvenile | 1,413.41 |