Gene detail

Detail information of GWHGAAEX014729/evm.TU.scaffold_61.50

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0988	RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference
nr	gi\|743774327\|ref\|XP_010917515.1\|	PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9LQV2\|RDR1_ARATH	RNA-dependent RNA polymerase 1
trEMBL	tr\|W1PVQ6\|W1PVQ6_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN11375.1}
TAIR	AT1G14790	RNA-dependent RNA polymerase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000058	2779512	2788358	+

Transcript Sequence
>GWHTAAEX014729 ATGATGCGGCGCTTTCCGAATGCTTCAAAAGCAGACGGCAAAACACTTCTTATTTTTGGTTTCCCAATTGGCACAACAGCAATTCAAGTTAAGGATTATCTGGAGTGTCATATTGGAGAAGGATCTGTGTTTGCTGTGAAGCTCAGACTACCCAAAATTGAGAAAACAACTTCAAAAGCATATGCTTTAGTGCAGTTTGAAAGCATCACTGGAGCTGTTGAAGTTAAAAGGATGGCCATACAGTCGCTGGTGTTTAAGAATTCTTACTTGACATGTAAAGATGCTGAGCATGATATCGTTCCTAAGCCTAAAACTGTATCACATGAGATGGGGGATGTTATAGTGCATTTTGGTTGCCTAATTTCTGAAAGCAAGTTATTTATTCTCTGGACAGCAAAGAAAGTCAGAATTGAGTTTGGATTTAACTTGAGAAAGATAGACTTTTTCATAACATGGAAAGATTTTTCATATAAGCTTGAACTTTCTTATGAAAGCATATGGGAGATTCAACTATACCGTTCTGCTGCTCAACTTTCCCAGTCTCTCCTGATTCAGGTCCAAGCTGCCCCCAAAGTTTATATGCAGCCCCCGCAAAGTTCTTATGCTATGAATGAAAATCCTTTCTTTGATTATTACAAGTTTATTCCGGATGATTTGTGGGTAAGAACAACAGATTTTTCTCCATTGTGTGGCATAGGACAATCTACAACAATCTGTTTGCAACTTCCCTATCATTATGATCTTCCAAATATAAAGAGCAACTTTGTCTACTTCAAAGAAAGAAATGGCTATCTTAATTTGGTGAATGGATCTTCATACTCTTATGATTTAGGACTTGTGCCCATTGTCAGACCTCCGTTAGGATTTAGCATTCCATATAAAACTCTCTTTAAGATTAATTGTTTAGTGCAAAATGGGACACTTATTGGGCCAACTCTCGATGAAACATTTTTCAATTTGGTGAATCCTTTTGCTTCGCCCGTTGATTTTATAGAAAGGGCCTTAGAAAAGATGTCATATTTGAACAACTCCTGTTTTCAACCTGCCAAATGGCTTGAAGAGCAGTATGCAAAGTTTCGAAGATTAAAAAATCATTCAATGTCAGCTTCCATTTCATTGGATGAAGGCTTGGTATATGTTCACAGAGTTCTAGTAACACCTATTAAAGTCTACTTCTGTGGTCCTGATGTCAATGTTTCAAATCGCGTGGTTCGCAATTACTCTGAAGAAATTAATAATTTCTTAAGGGTTTCTTTTGTTGACGAGGATGAGGACAAAATGTGTTCAATGGATTTATTACCTCGTTGTCGTCTGGATGGCAAGCGTACTAAAATCTATGACAGGATATTGTTGACACTCAGAAATGGTATTACCATTGGTGATAAGAAATTTGAATTCCTTGCTTTCTCATCTAGTCAGTTAAGGGAAAATTCTATCTGGATGTTTGCATCTAGCAATGGAATAACAGCTGCCAGCATCAGGAAACGGATGGGAAATTTTAGCAGTATAAGAAACGTGGCTAAATATGCTGCTAGGCTTGGTCAATCTTTTGGCTGCTCTACAGAAACTTTAACTGTTCGTAGGGATGAAGTTGAAATTATTTGTGACATCAAAAATTCAGCAGGCTACATCTTTTCTGATGGCATCGGTAAGATTTCATTGGAATTTGCTAGGAGAGTAGCTATCAAATGTGGCTTGAAATGCTCAACACCTTCAGCATTCCAGATAAGGTATGGAGGTTATAAAGGCGTTGTGGCCGTTGATCTTATGTCAAAGACAATGTTATCTTTGCGGAACAGCATGTGTAAGTATGAATCAGATAACATTAAGTTGGATGTCCTTGCCTATGCCAAGTATCAGCCTTGCTTTCTTAATAGGCAGTTGATAACTCTTCTATCTACCCTTGGAGTTTCTGATGATGTTTTTGAAAAAAAACAAAAAGAGGCTATTGATCAATTGGATGCTATTTTAAGTGATGCCGATAGTGCAAAGGAAGCCATAGATTTAATGGCGCATGGAGAAACGACCAATATTCTTAAGGAAATGCTTGCTTGTGGCTATAAGCCTGATGAAGAGCCATTCCTTTCAATGATGCTACGGACATTTAGGGCTTCCAGATTGTTTGAATTGAGAACAAAATGA

Network for GWHGAAEX014729

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05183.11	RdRP	385	713	2.20E-86

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003968	Molecular Function	RNA-directed RNA polymerase activity
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.000
SRP064423	SRR2545915	Juvenile tuber	14.510
SRP108465	SRR5643513	five period of Gastrodia elata	3.900
	SRR5643514	five period of Gastrodia elata	3.160
	SRR5643515	five period of Gastrodia elata	2.690
	SRR5643524	five period of Gastrodia elata	2.700
	SRR5643525	five period of Gastrodia elata	3.000
	SRR5643528	five period of Gastrodia elata	1.950
	SRR5643658	five period of Gastrodia elata	3.460
	SRR5643659	five period of Gastrodia elata	4.900
	SRR5643660	five period of Gastrodia elata	7.630
	SRR5643661	five period of Gastrodia elata	4.040
	SRR5643662	five period of Gastrodia elata	4.050
	SRR5643663	five period of Gastrodia elata	6.320
	SRR5643664	five period of Gastrodia elata	6.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.990
SRP279888	Gastro	Gastrodia elata tuber	5.34
	Juven	Juvenile tuber	7.63
	Mother_Gastro	Mother tuber of Gastrodia elata	1.61
	Mother_Juven	Mother tuber of Juvenile	3.02