Detail information of GWHGAAEX014734/evm.TU.scaffold_61.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332662911|ref|YP_004445699.1| | 1.00E-39 | Naringenin-chalcone synthase [Haliscomenobacter hydrossis DSM 1100] |
| nr | gi|2290261|gb|AAB65094.1| | 0 | chalcone synthase homolog [Phalaenopsis hybrid cultivar] |
| Swissprot | tr|P53416|BBS_PHASS | 0 | Bibenzyl synthase |
| trEMBL | tr|A0A088G5Z5|A0A088G5Z5_9ASPA | 0 | Bibenzyl synthase {ECO:0000313|EMBL:AIM58716.1} |
| TAIR | AT5G13930 | 1.00E-148 | Chalcone and stilbene synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000058 | 3264812 | 3266232 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014734
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00195.18 | Chal_sti_synt_N | 3 | 220 | 7.30E-83 |
| PF02797.14 | Chal_sti_synt_C | 233 | 350 | 8.10E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00660 | CHS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Flavonoid biosynthesis | map00941 | ||
| Circadian rhythm - plant | map04712 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.590 |
| SRR5643514 | five period of Gastrodia elata | 1.130 | |
| SRR5643515 | five period of Gastrodia elata | 1.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.680 | |
| SRR5643525 | five period of Gastrodia elata | 10.370 | |
| SRR5643528 | five period of Gastrodia elata | 6.440 | |
| SRR5643658 | five period of Gastrodia elata | 9.550 | |
| SRR5643659 | five period of Gastrodia elata | 0.210 | |
| SRR5643660 | five period of Gastrodia elata | 0.730 | |
| SRR5643661 | five period of Gastrodia elata | 0.740 | |
| SRR5643662 | five period of Gastrodia elata | 0.510 | |
| SRR5643663 | five period of Gastrodia elata | 0.390 | |
| SRR5643664 | five period of Gastrodia elata | 0.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 54.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 96.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.60 |
| Juven | Juvenile tuber | 0.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.27 | |
| Mother_Juven | Mother tuber of Juvenile | 0.58 |