Detail information of GWHGAAEX014736/evm.TU.scaffold_61.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2179 | 2.00E-176 | Nucleotide excision repair complex XPC-HR23B, subunit XPC/DPB11 |
| nr | gi|672167811|ref|XP_008803880.1| | 0 | PREDICTED: DNA repair protein complementing XP-C cells [Phoenix dactylifera] |
| Swissprot | tr|Q7F0R1|PNG1_ORYSJ | 3.00E-07 | Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase |
| trEMBL | tr|A0A061ENL1|A0A061ENL1_THECC | 0 | DNA repair protein xp-C / rad4, putative isoform 1 {ECO:0000313|EMBL:EOY03914.1} |
| TAIR | AT5G16630 | 2.00E-176 | DNA repair protein Rad4 family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000058 | 3545367 | 3602441 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014736
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01841.18 | Transglut_core | 238 | 298 | 2.00E-06 |
| PF03835.14 | Rad4 | 488 | 596 | 3.50E-20 |
| PF10403.8 | BHD_1 | 684 | 732 | 2.90E-14 |
| PF10404.8 | BHD_2 | 737 | 795 | 9.70E-10 |
| PF10405.8 | BHD_3 | 802 | 875 | 1.70E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10838 | XPC | Nucleotide excision repair | map03420 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.960 |
| SRR2545915 | Juvenile tuber | 12.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.810 |
| SRR5643514 | five period of Gastrodia elata | 2.830 | |
| SRR5643515 | five period of Gastrodia elata | 2.670 | |
| SRR5643524 | five period of Gastrodia elata | 2.960 | |
| SRR5643525 | five period of Gastrodia elata | 1.960 | |
| SRR5643528 | five period of Gastrodia elata | 1.870 | |
| SRR5643658 | five period of Gastrodia elata | 2.600 | |
| SRR5643659 | five period of Gastrodia elata | 4.080 | |
| SRR5643660 | five period of Gastrodia elata | 6.140 | |
| SRR5643661 | five period of Gastrodia elata | 4.760 | |
| SRR5643662 | five period of Gastrodia elata | 4.720 | |
| SRR5643663 | five period of Gastrodia elata | 3.760 | |
| SRR5643664 | five period of Gastrodia elata | 5.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.69 |
| Juven | Juvenile tuber | 6.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.09 | |
| Mother_Juven | Mother tuber of Juvenile | 5.95 |