Detail information of GWHGAAEX014738/evm.TU.scaffold_61.68
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383766272|ref|YP_005445253.1| | 0 | alanyl-tRNA synthetase [Phycisphaera mikurensis NBRC 102666] |
| KOG | KOG0188 | 0 | Alanyl-tRNA synthetase |
| nr | gi|672200955|ref|XP_008778009.1| | 0 | PREDICTED: alanine--tRNA ligase-like [Phoenix dactylifera] |
| Swissprot | tr|P36428|SYA_ARATH | 0 | Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_03133} (Precursor) |
| trEMBL | tr|M0U8R7|M0U8R7_MUSAM | 0 | Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_03133} |
| TAIR | AT1G50200 | 0 | Alanyl-tRNA synthetase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000058 | 3716641 | 3784752 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014738
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01411.18 | tRNA-synt_2c | 45 | 618 | 1.50E-215 |
| PF07973.13 | tRNA_SAD | 717 | 775 | 5.50E-17 |
| PF02272.18 | DHHA1 | 832 | 977 | 1.40E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01872 | AARS, alaS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0043039 | Biological Process | tRNA aminoacylation |
| GO:0006419 | Biological Process | alanyl-tRNA aminoacylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0004813 | Molecular Function | alanine-tRNA ligase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 64.120 |
| SRR2545915 | Juvenile tuber | 49.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.590 |
| SRR5643514 | five period of Gastrodia elata | 36.740 | |
| SRR5643515 | five period of Gastrodia elata | 35.690 | |
| SRR5643524 | five period of Gastrodia elata | 35.280 | |
| SRR5643525 | five period of Gastrodia elata | 58.140 | |
| SRR5643528 | five period of Gastrodia elata | 56.270 | |
| SRR5643658 | five period of Gastrodia elata | 53.540 | |
| SRR5643659 | five period of Gastrodia elata | 38.760 | |
| SRR5643660 | five period of Gastrodia elata | 38.960 | |
| SRR5643661 | five period of Gastrodia elata | 36.460 | |
| SRR5643662 | five period of Gastrodia elata | 38.810 | |
| SRR5643663 | five period of Gastrodia elata | 39.990 | |
| SRR5643664 | five period of Gastrodia elata | 39.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 44.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 50.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 44.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 49.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.62 |
| Juven | Juvenile tuber | 49.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 48.56 | |
| Mother_Juven | Mother tuber of Juvenile | 73.09 |