Detail information of GWHGAAEX014740/evm.TU.scaffold_61.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296242589|ref|YP_003650076.1| | 4.00E-35 | 30S ribosomal protein S19 [Thermosphaera aggregans DSM 11486] |
| KOG | KOG0898 | 1.00E-73 | 40S ribosomal protein S15 |
| nr | gi|672165835|ref|XP_008802834.1| | 1.04E-84 | PREDICTED: 40S ribosomal protein S15-like [Phoenix dactylifera] |
| Swissprot | tr|O65059|RS15_PICMA | 4.00E-81 | 40S ribosomal protein S15 |
| trEMBL | tr|C0KQW1|C0KQW1_JATCU | 2.00E-84 | Uncharacterized protein {ECO:0000313|EMBL:KDP40280.1} |
| TAIR | AT5G09500 | 1.00E-73 | Ribosomal protein S19 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000058 | 3856544 | 3881864 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014740
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00203.20 | Ribosomal_S19 | 49 | 131 | 4.80E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02958 | RP-S15e, RPS15 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0015935 | Cellular Component | small ribosomal subunit |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.290 |
| SRR2545915 | Juvenile tuber | 7.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.080 |
| SRR5643514 | five period of Gastrodia elata | 2.590 | |
| SRR5643515 | five period of Gastrodia elata | 3.140 | |
| SRR5643524 | five period of Gastrodia elata | 2.230 | |
| SRR5643525 | five period of Gastrodia elata | 5.640 | |
| SRR5643528 | five period of Gastrodia elata | 3.780 | |
| SRR5643658 | five period of Gastrodia elata | 3.330 | |
| SRR5643659 | five period of Gastrodia elata | 5.180 | |
| SRR5643660 | five period of Gastrodia elata | 2.740 | |
| SRR5643661 | five period of Gastrodia elata | 4.410 | |
| SRR5643662 | five period of Gastrodia elata | 3.930 | |
| SRR5643663 | five period of Gastrodia elata | 6.050 | |
| SRR5643664 | five period of Gastrodia elata | 5.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.37 |
| Juven | Juvenile tuber | 3.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.99 | |
| Mother_Juven | Mother tuber of Juvenile | 3.42 |