Detail information of GWHGAAEX014756/evm.TU.scaffold_62.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743845106|ref|XP_010938499.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340 [Elaeis guineensis] |
| Swissprot | tr|Q9MA85|PP215_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g05340 |
| trEMBL | tr|B9FH71|B9FH71_ORYSJ | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EEE62323.1} |
| TAIR | AT3G05340 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000060 | 91967 | 94732 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014756
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 57 | 83 | 1.80E-05 |
| PF01535.19 | PPR | 88 | 114 | 6.30E-05 |
| PF01535.19 | PPR | 162 | 189 | 0.0015 |
| PF01535.19 | PPR | 190 | 216 | 0.01 |
| PF01535.19 | PPR | 262 | 282 | 0.025 |
| PF01535.19 | PPR | 293 | 320 | 0.0059 |
| PF13041.5 | PPR_2 | 391 | 439 | 1.00E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.780 |
| SRR2545915 | Juvenile tuber | 0.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.610 |
| SRR5643514 | five period of Gastrodia elata | 0.840 | |
| SRR5643515 | five period of Gastrodia elata | 0.820 | |
| SRR5643524 | five period of Gastrodia elata | 0.600 | |
| SRR5643525 | five period of Gastrodia elata | 0.080 | |
| SRR5643528 | five period of Gastrodia elata | 0.140 | |
| SRR5643658 | five period of Gastrodia elata | 0.020 | |
| SRR5643659 | five period of Gastrodia elata | 0.450 | |
| SRR5643660 | five period of Gastrodia elata | 0.470 | |
| SRR5643661 | five period of Gastrodia elata | 1.120 | |
| SRR5643662 | five period of Gastrodia elata | 0.540 | |
| SRR5643663 | five period of Gastrodia elata | 0.360 | |
| SRR5643664 | five period of Gastrodia elata | 0.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.860 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.860 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.69 |
| Juven | Juvenile tuber | 0.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.11 | |
| Mother_Juven | Mother tuber of Juvenile | 0.15 |