Detail information of GWHGAAEX014758/evm.TU.scaffold_62.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307154267|ref|YP_003889651.1| | 1.00E-15 | Serine/threonine-protein kinase-like domain-containing protein [Cyanothece sp. PCC 7822] |
| nr | gi|743763089|ref|XP_010911209.1| | 0 | PREDICTED: uncharacterized protein LOC105037214 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9FE91|C3H62_ARATH | 2.00E-10 | Zinc finger CCCH domain-containing protein 62 |
| trEMBL | tr|M0S3T1|M0S3T1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P28240_001} |
| TAIR | AT1G21650 | 3.00E-121 | Preprotein translocase SecA family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000060 | 524296 | 573660 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014758
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13445.5 | zf-RING_UBOX | 6 | 51 | 3.70E-06 |
| PF00400.31 | WD40 | 527 | 557 | 0.21 |
| PF00400.31 | WD40 | 658 | 689 | 0.0054 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.040 |
| SRR2545915 | Juvenile tuber | 8.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.070 |
| SRR5643514 | five period of Gastrodia elata | 9.480 | |
| SRR5643515 | five period of Gastrodia elata | 8.700 | |
| SRR5643524 | five period of Gastrodia elata | 10.270 | |
| SRR5643525 | five period of Gastrodia elata | 9.610 | |
| SRR5643528 | five period of Gastrodia elata | 5.940 | |
| SRR5643658 | five period of Gastrodia elata | 8.560 | |
| SRR5643659 | five period of Gastrodia elata | 7.970 | |
| SRR5643660 | five period of Gastrodia elata | 7.870 | |
| SRR5643661 | five period of Gastrodia elata | 6.890 | |
| SRR5643662 | five period of Gastrodia elata | 6.840 | |
| SRR5643663 | five period of Gastrodia elata | 8.260 | |
| SRR5643664 | five period of Gastrodia elata | 8.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.29 |
| Juven | Juvenile tuber | 18.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.39 | |
| Mother_Juven | Mother tuber of Juvenile | 20.16 |