Gene detail

Detail information of GWHGAAEX014759/evm.TU.scaffold_62.9

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743867454\|ref\|XP_010905320.1\|	8.57E-112	PREDICTED: uncharacterized protein LOC105032551 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9SGH2\|MBD9_ARATH	1.00E-11	Methyl-CpG-binding domain-containing protein 9
trEMBL	tr\|M0RTF3\|M0RTF3_MUSAM	5.00E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P18730_001}
trEMBL	tr\|M0RTF3\|M0RTF3_MUSAM	1.00E-48	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P18730_001}
TAIR	AT1G77250	5.00E-35	RING/FYVE/PHD-type zinc finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000060	586652	596282	+

Transcript Sequence
>GWHTAAEX014759 ATTTATCTTAGAACTCTTTCGACTGCATGCTCCTCGGTTTCACGAGCCAAAAACCTTTCCTCTCCCACCTTTCTTCTTCAAAATTTCAAATCTCACCGCCGAGGGGCCTCAGCGAGTCAGCAGCCTTAGGAGACTTGCATCGGACGAGAAGCAGTAGGATTCCGGCTACTTAGCTAGGGTTCTTACTCTTGTCTTTTCGTGCTGCGCTCTTTTCCTAGTTTTCTTATCCGAGAACGCTTGATGGTGTTCGTGCGGTATCGACAGCGGATCTGGATTGAGTTCTGTTTGTTTCACGTTGGCCTCTAATGAAAACCTAAGTCTGGGAACAAGAGACGGCCGCTAGGGTTTGAGCTATGCTAGGCGGAAGAAAGAGCTGCAATGGTGTGGTGAATCTGGGGGAATTGAGTGCTGATGGGTTTATCACTTACAAAAGGAAGAAGCGGGCAAGGGCCAGTAGCGATGCGCAATATGTGAAGGAGTGTCTTGATGGTGCCTGTCAACATGATGCGTTTTCAAAAGTTGGTAGTCGCTGGCAAAATATTTTGCAATACATGCTTCATCTTCCAGATGTAGATGAAAGTGGTGGTATCCAGAGCTGCATTCAGGAAGCACTCGAAACATGCCTTCTTGGTTTCACGAAGAAGATTAAAACGGGTGTGCCCATTGCTATTATGCCATCTGAGGACAGATTTAACGGCTACTGCGAAAATCAGGATCCGTCTAATGTTAAGGATGCTATTCGTGAATCTGCTGCAGATGGATCAAATATAAATATAGAGAGCCATACTGATATGATCAAGAACACTGCAAATTGTCAAAAAGTGTTGCAGGAAATTTTCTCTTCAGAGAACTTTACTTCTCTGTGTGATGTAGTCTGTGAAAGTTTCCGGAATGAAACTGTCAGAAAGCTACTTGACTTTAGCTTGATAAATTCTAAGCTGAAAAGTGGAGTTTATGAACAGATGCCGGTTTCATTTCATGAAGACATTCAGCAGTTGTGGTGTAAATTTCAAAAGCTTGGTCAAGACATCTTGCTTTTTTCTAGTAACCTTTCCAAACAGACGAGAATTTCTTACGTAAAGCAGGTTGGAGAAAAGCTTGGATTGGAAGTTGATGAAGAAAAGTTTGAGGAGAACCCTCAAGGTGTTGCGGAGCTGAAAAATTCCATGGACTCTCATGTCACAGGGCAGTTTCCATTGAGCGAATCTGGCCGGTCTAATAAGCTTGATCAAAGCGAAGCATCTTGCTTGTGCAAAGTCTATCCCTGCAAGCAGTGCGGCAATGATGTCGTCGGAGAACACAGGCTTATATGTGATGGTTGTGAAGCAATTTACCATTTATCTTGTGCGGAACCTCTCAGTCAGAAGGTCCCTTCTCGGAGCTGGTATTGTTCTTCCTGTCTTGGAGATGGAAGCAAATCACCAGCTGCCATTAGGGATAATCAACTTAAAGACTTGCAAGATGAGTGGGCCATTTGTAGCAGGCCTGAGGACTATAATAGTTTTAAAGAGCGTGGTTGTTCGAATAAACTGTGCCAAAGCGTAGCCTCCTGCAGATACAAGGTCTTTATCTGCAAGCACTGCAGCACCGAAGCAATCGGGGAGCACAGCCTTATATGTGACGGATGCGAGGCAATTTACCACATTTCGTGTGTCGAGCTTTACGGTGAAGAGATTCCCACAAGAAACTGGTATTGTTCTTCGTGCCGTTACAGTGCTGACAGAGGCGAGGCGCTGCCTGAGCCGGTTATAGAGGGCGAACAGGATTTGTTGCACCAGAACTGCGTTGTTTGCGATAGGATCGAGTTTTCTGAGGCTGAGAAAGATGTTACCAATGAAACGAGGGAGAGCTCTGTTTCTAGCATGGAGTTTGATGGTCTTCCGGAGCCCTCGAGAACTGCCAAGGCACATCTGTGCAAGCTGTGTGGAACCTGCGAGGACGATGACAGAAAGTTCTTGACTTGTGGGAACAGCTACTGCTCCTACAAGTACTACCACATCAGGTGCCTGAGAAACAGCCAGATTGCGATCCAGCAGCAGCAGAACCGGCACTGCTGGTATTGCCCGTCGTGCCTGTGCAGAGCCTGCTTTCTAGATCAAGACGATGCCGATATAGTGCTGTGCGATGGCTGCGATGAAGCTTACCACACTTACTGCATGAAGCCACCCCGAACATCTGTTCCCAAGGGCCAGTGGTACTGTGTTCAGTGCAACATTGTTAGGGCGAAGGAAGGGATTCGAAGGCACGAGCAATGGATCCTGCAGCAGCATTACAAGAAGGACAATGTTTTTCTGGCTGCCAAAAGCAACCGCCGAATGAATATCCTGCTGAACGCCGTCGAGAAGGTGTGCTCTGAGGAATGAACGACGCAAAGGCTGCCAAGAATTCGCTTGATCTGTAGCCTGGGATGGCCCTTTGACGAATTTCTTACCGATGCATCTTTAGGACACATTAGAGGGGACATTCTATCGGAGTTTGCTCGAAGCTCTGATGGCATTGTTTGATGTAAGTTTTTTTTTGTTGAGAAAATTGTATTGTGTTTTTTTGGAGTTACCGTTCTAATTGCATGATCACATCTGTTTGAATGTTCTTGCCTTTTTATGTTTTTCTTGGGGAAGGATTATTTACTGCTCTATCCATTGATAGCTTTGCAACTACAAGCACAGTTCAGACCTTTTTCTTTCTTGTATCATTTTGTTCTGTTACTAGTCAGTCCAGAATCCGACAAATAGCTAAAATACCTTTGGATGAATGACACGTGGCAGATGTTTCTACTTGTTATCCATCCAACGGTTATTGAAACTTTTATTCTATTGAATTTTGAATATTATATATATGCCCGTGTATGTGTTGTTGTGCTAATTGTGGACAT

Network for GWHGAAEX014759

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.28	PHD	305	350	4.20E-07
PF00628.28	PHD	406	452	3.40E-08
PF00628.28	PHD	575	620	4.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.270
SRP064423	SRR2545915	Juvenile tuber	19.050
SRP108465	SRR5643513	five period of Gastrodia elata	14.270
	SRR5643514	five period of Gastrodia elata	12.880
	SRR5643515	five period of Gastrodia elata	14.070
	SRR5643524	five period of Gastrodia elata	13.670
	SRR5643525	five period of Gastrodia elata	11.840
	SRR5643528	five period of Gastrodia elata	11.640
	SRR5643658	five period of Gastrodia elata	10.500
	SRR5643659	five period of Gastrodia elata	20.190
	SRR5643660	five period of Gastrodia elata	20.570
	SRR5643661	five period of Gastrodia elata	19.390
	SRR5643662	five period of Gastrodia elata	20.590
	SRR5643663	five period of Gastrodia elata	20.530
	SRR5643664	five period of Gastrodia elata	15.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.760
SRP279888	Gastro	Gastrodia elata tuber	19.86
	Juven	Juvenile tuber	24.40
	Mother_Gastro	Mother tuber of Gastrodia elata	25.91
	Mother_Juven	Mother tuber of Juvenile	26.85