Detail information of GWHGAAEX014761/evm.TU.scaffold_62.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|298293826|ref|YP_003695765.1| | 3.00E-52 | tRNA pseudouridine synthase A [Starkeya novella DSM 506] |
| KOG | KOG4393 | 6.00E-42 | Predicted pseudouridylate synthase |
| nr | gi|743816214|ref|XP_010930581.1| | 2.84E-159 | PREDICTED: tRNA pseudouridine synthase-like 1 isoform X1 [Elaeis guineensis] |
| trEMBL | tr|D7TGT5|D7TGT5_VITVI | 3.00E-153 | tRNA pseudouridine synthase {ECO:0000256|RuleBase:RU003792} |
| TAIR | AT1G09800 | 6.00E-42 | Pseudouridine synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000060 | 692329 | 751604 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014761
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01416.19 | PseudoU_synth_1 | 68 | 177 | 1.80E-07 |
| PF01416.19 | PseudoU_synth_1 | 218 | 365 | 1.00E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009451 | Biological Process | RNA modification |
| GO:0001522 | Biological Process | pseudouridine synthesis |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0009982 | Molecular Function | pseudouridine synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.120 |
| SRR2545915 | Juvenile tuber | 8.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.020 |
| SRR5643514 | five period of Gastrodia elata | 4.810 | |
| SRR5643515 | five period of Gastrodia elata | 5.670 | |
| SRR5643524 | five period of Gastrodia elata | 5.380 | |
| SRR5643525 | five period of Gastrodia elata | 4.570 | |
| SRR5643528 | five period of Gastrodia elata | 3.970 | |
| SRR5643658 | five period of Gastrodia elata | 3.940 | |
| SRR5643659 | five period of Gastrodia elata | 6.530 | |
| SRR5643660 | five period of Gastrodia elata | 8.070 | |
| SRR5643661 | five period of Gastrodia elata | 8.590 | |
| SRR5643662 | five period of Gastrodia elata | 6.850 | |
| SRR5643663 | five period of Gastrodia elata | 6.540 | |
| SRR5643664 | five period of Gastrodia elata | 7.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.80 |
| Juven | Juvenile tuber | 7.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.84 | |
| Mother_Juven | Mother tuber of Juvenile | 6.35 |