Detail information of GWHGAAEX014770/evm.TU.scaffold_62.26


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28340Nuclear pore complex, rNpl4 component (sc Npl4)
nrgi|743856115|ref|XP_010941763.1|0PREDICTED: LOW QUALITY PROTEIN: NPL4-like protein [Elaeis guineensis]
Swissprottr|O82264|NPL42_ARATH0NPL4-like protein 2
trEMBLtr|A9PCA9|A9PCA9_POPTR0NPL4 family protein {ECO:0000313|EMBL:EEE82090.1}
TAIRAT2G479700Nuclear pore localisation protein NPL4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006015267061540913-
Transcript Sequence

Network for GWHGAAEX014770

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11543.7UN_NPL412997.40E-08
PF05021.14NPL41833003.00E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14015NPLOC4, NPL4 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms41.290
SRR2545915Juvenile tuber32.230
SRP108465SRR5643513five period of Gastrodia elata31.280
SRR5643514five period of Gastrodia elata31.930
SRR5643515five period of Gastrodia elata29.950
SRR5643524five period of Gastrodia elata29.630
SRR5643525five period of Gastrodia elata33.550
SRR5643528five period of Gastrodia elata32.570
SRR5643658five period of Gastrodia elata24.030
SRR5643659five period of Gastrodia elata38.850
SRR5643660five period of Gastrodia elata45.400
SRR5643661five period of Gastrodia elata43.120
SRR5643662five period of Gastrodia elata35.590
SRR5643663five period of Gastrodia elata37.750
SRR5643664five period of Gastrodia elata40.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_142.660
SRR6049655Rhizomagastrodiae_C368-T10_good_144.420
SRR6049656Rhizomagastrodiae_C368-T07_good_142.240
SRR6049657Rhizomagastrodiae_C368-T07_good_140.840
SRR6049658Rhizomagastrodiae_C368-T04_good_148.120
SRR6049659Rhizomagastrodiae_C368-T04_good_149.340
SRR6049660Rhizomagastrodiae_C368-T01_good_148.290
SRR6049661Rhizomagastrodiae_C368-T04_good_146.490
SRR6049662Rhizomagastrodiae_C368-T01_good_147.880
SRR6049663Rhizomagastrodiae_C368-T01_good_145.910
SRR6049664Rhizomagastrodiae_C368-T10_good_140.200
SRR6049665Rhizomagastrodiae_C368-T10_good_140.200
SRP279888GastroGastrodia elata tuber 42.20
JuvenJuvenile tuber49.64
Mother_GastroMother tuber of Gastrodia elata 38.08
Mother_JuvenMother tuber of Juvenile 36.79