Gene detail

Detail information of GWHGAAEX014781/evm.TU.scaffold_62.41

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1213	4.00E-85	Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1
nr	gi\|743762553\|ref\|XP_010908716.1\|	1.37E-111	PREDICTED: sister chromatid cohesion 1 protein 4-like isoform X3 [Elaeis guineensis]
Swissprot	tr\|Q8W1Y0\|SSC14_ARATH	2.00E-92	Sister chromatid cohesion 1 protein 4
trEMBL	tr\|M0RRA0\|M0RRA0_MUSAM	3.00E-102	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P11200_001}
trEMBL	tr\|M0RRA0\|M0RRA0_MUSAM	3.00E-45	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P11200_001}
trEMBL	tr\|M0RRA0\|M0RRA0_MUSAM	2.00E-41	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P11200_001}
TAIR	AT5G16270	4.00E-85	sister chromatid cohesion 1 protein 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000060	2031757	2080301	+

Transcript Sequence
>GWHTAAEX014781 ATGTTCTATTCTCAGTTTATATTGGCAAAGAAAGGGCCGTTGGGGACGATATGGATTGCGGCCCATTTGGAAAGGAAGTTGAGGAAGAATCAGGTGGCGGATACTGATATTGGTGTATCTGTAGATTCTATACTTTTTCCTGATGCACCAATTGCATTGCGGCTGTCTAGTCACCTTCTTCTTGGCGTGGTGCGAATATACTCAAAAAAGGTTAACTATCTTTTCAATGACTGCAGTGAAGCTTTGATCAAAATAAAGCATGCATTTCGCTCTACAGCGGTTGATCTTCCTCCTGAAGAATCAACTGCCCCGTATAATTCAATTACCTTGCCAGAAAATTTTGACCTCGACAACTTTGAACTCCCTGACAGTGCCTGCCTTGATAGTAATTTTGTGGACCATCATGTTAGTACCAGAGAGCAGATTACTCTTCAAGATACAATAAATGACACTCCATACCCAACTGTAAAGTTTGGGTTAGATGAGAGGTTTGGTGATGAAGATGTTTCTCAAATAGGTCTAGAGCTTGATGAGGAAATATTCTTGGACAAGAAAATCTCACCTCAGCAGGATGAGATTTCGATGAGTTTGAAAGTGAGTGGACTAGATTCTGGTGAAACTTCTGTACCTTTGACTAGCATGGGAATGGATGCACAATTTGGATATGATGAAAAAGGTGGTGAAATCCCAAATGAATTGTCAGAACTTCTATCGAATAATTATGACAAGAACTATTTTTCAAATTCTGATGAATTGAGAAGGGATGCAAATTCTGCTCGCCATGGTTATACTATTCAAACTCCAGACCTTAATGAGGTTTTTCAACCTGAGCGTCATACAGATTCATCACAACATATTCCTTTCAGCACAAGTGAAGTTCAAACCTCTTGTTTGGTTGAACCTACACATGAACCTTCTACTCCTGGGTTATTAGAAGCAGTTCCATCCAAAGCAGTTCCAGATTTGAGTCCTCAAGAAAAAGTGGAGACACATACTGAATTAGGCAGGTCTTCTTGGAATAGTAGTAGTGCTTACCTGGAGGTTGAATCCATTGAAACGGGAAGAAAAAGTGTTTTTTTAAATGCAGAAAATGTTCAAGAAATGCCTATTAATTCTGTTTTGAACCCAATGCCCGGCTTTGTATCAACAACTTATTCAACTTGGAATCCAACAACTGATGATGTTTGCTTAATTTCTGAGAATCAATATCAGCAAAGTCACTTAATTGGAAATGAAGATGGTCAAATATCAACTACTGACCGCAGGCTTGATAATGGGGAAGTGATAAAACATTCAGGTTTTTCTAATGAAACAATTAGTTTAGCATCCCCTCTTAGTTTGACAACACGTTTTGAAGAAGAGCGTGCCACCTCCAATATTTGTGCAGATAACATGGATGTATCTAGTAGCATTTCAAATGTCAAATTGCCACAAAAAGACTATATTAACGAGGCATCAAAAGTTGTCAACATAGGTCATATAGAAGATGTTGATTCTTGTGTTACTAGATTTGTAGCTGGATCTGAATATATTTCAAGGCCTTCGGGTTCTAATCTACATCCAAATTTTGTACATGGCATTTCTTCAGGTTTTCATCATGAAACCATTAGTTTAACATCCCCTTCTATGCTGGCAGCTCGTTTTGAAGCAGTTCCTACTACTTCCAGTATTTGCACGTATAAAATGGATGTATCAGGAGGTATTTCAGAAGTGAAAAAGACGCAAACAAAAAATAGTTGCATTGGGCCACCAGAATTTGCTAACCTAGGACATGTAGAAGTTGTTGATTCTTGCATCAGTTCGCAAGTAGTTGATTCAGATTTTCTTTCAAGATCTTCTGGTTCAACTATGCGACCGATTTTCTTACATGGTGATCCTTCAGAGTTTTCTAATGAAACAGCTAATGTTACACCACCACTTAATAAACTTGCAGCAGAATCTGTTACATCCAGTGTTTGCACTGATAACATTGGTGTATTCGGAGGTATTTCAGATATGAAAAGTATATCAAAAAAGGATAGTAATGCTCCATCGAAAGTTTCCAACCTAGGTCATGTTGAAGATGGTGATTTTTGCATGGGCACATCAGCAGCTGAATCTGATTGTTTTCCAAACTCTTGTGGCTCAAATCTGTCTCCAATTTTCTTACACAGTGATCCTTCTGGTTTTTCTCATGGAGCAGTAAATCTTACAGCTCCTCCTGATCTGGCAGTACATTTTGAAGCAGAACCTGCTACTTCAAATATTTGCACGGATAACATGGATGTATCTGGAGGTTTTTTGAATGGTAGAACAATGCTTAAAAACTGCAATAACAGGGCATCAGAACTTACCAATCTGGGTCGTGTTGAAGCTGAAGGGACTTTGGGAGAAATCTCCAAGTTGTCTTTAAAGGACCATCAATCTTTCCATTTGAAAACCCCGACAAGGGAGGAAGTGCTACACAATACCAGATCTTCTTTTGAGGTGCAAGGTGATGATTTGCGCTATACTAATAATGACAGAACCATTAGTCTGGAGGAGAAACATATACCCAGATTTTCATCCTCTGACATCAAATGTGGTCCAAATAAACATGATGAATCATCAATGGGTGCTTTTTCAAAAGTTACCCATTTGAATAATGCAAATTTCTCTTCAAGTTCTGAAATATTAGGACAGGAGAATATGCTAGCCCCAACTTTTGTTGTCAATGCACCAAATTATCAAGGGCTGCAAACCGTAGATACTTTGTCTGATGTCAGTGTTGACAGAAATAGCGGTCATTACAGCAGAAAGAGAGGTGTGATGGATAGCCCTATACTAACGCAAAGTGGTAGTTCAGCCAAATTATCTGGAATACCGAGAAGTAAAAGAAGTGTTGACTATATTCCTGCTGATGATGATGTATTGGCATCTCTTTTGGCTGGACGATCAGCTCCATCCTTGGAAATAGGCTCCATTCCTTCTCTTTCCAAAGTTTCGTCTCAAAAACGCCCCCGTACAATCTCTAGGGTAGGCATGCATAAGAGAAGAAAGGTGCTGGTGGATGATGCTATGGTTTTACATGCTGATGCTATTCGTCAACAACTAATAAACACGGAAGACATTCGCCGCATGCGAAAAAAAGCTCCTTGTACTCGACCAGAAATTTGGAAGATTTGTATAGGTGAAAAGGATGATGATATTTTTGATCATTCAATACTAACTGGTTTAACCGTGGAGTTAAATAATCTGTATGATCTGAATTATAACCTGCAAAAGGATCCAAGTTCTCTAGTAAAGGAATATAGGATCAAAACATCTGGAGAAACAAGGTCTTCCAAAATCGAGGAGATACTCAATGAACCGAGTGTTAAAGAAATGAATGATGGAATCCCATTTGTTCCTGGCCCAGTTTATAGAAATGAATATCCATTAAGCAAAACTGCATTTGATACAATGCAAATTCATGAAGATGGTGCACTTTGTGTTGCACATGATCAATTAAAAAACTTGGGTGTTCCGCCTAAAGTATGTCCAATCAATAATGAACAAGAATCTGTGACATGTGCTATGCAGCCTGATACAGGGATAGGTGCTAATTCAATTAATCAAGAGCTGCTTGTTCAGACTCAAGCTGAGCCAATCAGCAATGAACATGAGTCTGTGATTTGTACATTGCCACCTGATGCAGAGACTGGTGCTAATTTAATCATTCAAGAGCTACCTGTTCAGCCTCTAGCTCTGCCAATCAACAGTGAGAAAGTGTCTACGACTTGTGTAATGCGACCTAATATAGAAACAGGAGTTAATTCAATTGTTCATGAGGAGCTTATCCCTGAAAATGACAAACGTTTTTCATCATTTGAGAAGTTTAATGATCAGAGCATAAATCTACCAGAAAAAACACTGCAAAGTAATGCATATAATTCCTTGCGTTCTCCTAATGATGTCTCAGCTTGTGAAGAATGCACTACCATTGTCCGTACAGATGGTGACTTGGCATTTGTACCTATTTCGGAATCACATATCCAGGTTGAAAATGTAGGTAATACTGTGGGCAAAATCATTAACAAACTAAGAACTGATACTCTATCTAATACTGTTGGTGCAATCATCAATGAAGAAGAGAAATCTATGTATGCCATGGATACTGAACACTCAAAATCCAGCCACACTATCACTATTGATGGTGATGCTAGTGCAGTTGTTAACGTGCACGCTCATATGCCACCTGACAGTGGGACAGAGTTGCTGTTAGAGAAAACTAATGGCTCAGACGTTATTGCAGATAGTTGTTCTGCAGAAGCCTTGGGGAATGAAGAGAGGCCTGTAAAGGATGTCACATTTACAGAACCGGATAAGGTTACATGTGCTCCAAATAGCGTAGAAGTTTCTTTAGCAATGGTTGAAAATAGTTGTGTACAGGACATCAACTTTAAGGGTGGTTTGCATGCAGACAACATGCTCGTAGATGCTGGTGCTTCACGGGATTCAAGTGATTTTTGCAGTTCAATGGACGTCAACGGCACAGGTTTTTTGAATGAAGATGACGATGACGCAGACTTTGATGATGCAGACAATGATGATCCAAATCCTGAGGATGATGAATCACTGGAGAATAGTGGTTGGTCTGTCCGCACAAGGGGTGTTGCAAAGTATCTAAAAAATTTATTTGACGAAGAATCTGGGCAAGGGAGAAAATCCGTCGTGGTGGATCATATTTTGGCCGGTAAAACCCGTAAAGAAGCTTCGAGAATGTTCTTCGAAACCTTGGTCCTGAAAACAAGAGATTACATTCAAGTGGAGCAGGAAAAGCCTTTTGAGTACATTCAGATCAAACCCAGAATAAAGCTCCTCAAGTCAGAATTCTGA

Network for GWHGAAEX014781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04825.12	Rad21_Rec8_N	1	102	4.20E-37
PF04824.15	Rad21_Rec8	1555	1605	7.10E-19

Protein Sequence

>GWHPAAEX014781
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDAPIALRLSSHLLLGVVRIYSKKVNYLFNDCSEALIKIKHAFRSTAVDLPPEESTAPYNSITLPENFDLDNFELPDSACLDSNFVDHHVSTREQITLQDTINDTPYPTVKFGLDERFGDEDVSQIGLELDEEIFLDKKISPQQDEISMSLKVSGLDSGETSVPLTSMGMDAQFGYDEKGGEIPNELSELLSNNYDKNYFSNSDELRRDANSARHGYTIQTPDLNEVFQPERHTDSSQHIPFSTSEVQTSCLVEPTHEPSTPGLLEAVPSKAVPDLSPQEKVETHTELGRSSWNSSSAYLEVESIETGRKSVFLNAENVQEMPINSVLNPMPGFVSTTYSTWNPTTDDVCLISENQYQQSHLIGNEDGQISTTDRRLDNGEVIKHSGFSNETISLASPLSLTTRFEEERATSNICADNMDVSSSISNVKLPQKDYINEASKVVNIGHIEDVDSCVTRFVAGSEYISRPSGSNLHPNFVHGISSGFHHETISLTSPSMLAARFEAVPTTSSICTYKMDVSGGISEVKKTQTKNSCIGPPEFANLGHVEVVDSCISSQVVDSDFLSRSSGSTMRPIFLHGDPSEFSNETANVTPPLNKLAAESVTSSVCTDNIGVFGGISDMKSISKKDSNAPSKVSNLGHVEDGDFCMGTSAAESDCFPNSCGSNLSPIFLHSDPSGFSHGAVNLTAPPDLAVHFEAEPATSNICTDNMDVSGGFLNGRTMLKNCNNRASELTNLGRVEAEGTLGEISKLSLKDHQSFHLKTPTREEVLHNTRSSFEVQGDDLRYTNNDRTISLEEKHIPRFSSSDIKCGPNKHDESSMGAFSKVTHLNNANFSSSSEILGQENMLAPTFVVNAPNYQGLQTVDTLSDVSVDRNSGHYSRKRGVMDSPILTQSGSSAKLSGIPRSKRSVDYIPADDDVLASLLAGRSAPSLEIGSIPSLSKVSSQKRPRTISRVGMHKRRKVLVDDAMVLHADAIRQQLINTEDIRRMRKKAPCTRPEIWKICIGEKDDDIFDHSILTGLTVELNNLYDLNYNLQKDPSSLVKEYRIKTSGETRSSKIEEILNEPSVKEMNDGIPFVPGPVYRNEYPLSKTAFDTMQIHEDGALCVAHDQLKNLGVPPKVCPINNEQESVTCAMQPDTGIGANSINQELLVQTQAEPISNEHESVICTLPPDAETGANLIIQELPVQPLALPINSEKVSTTCVMRPNIETGVNSIVHEELIPENDKRFSSFEKFNDQSINLPEKTLQSNAYNSLRSPNDVSACEECTTIVRTDGDLAFVPISESHIQVENVGNTVGKIINKLRTDTLSNTVGAIINEEEKSMYAMDTEHSKSSHTITIDGDASAVVNVHAHMPPDSGTELLLEKTNGSDVIADSCSAEALGNEERPVKDVTFTEPDKVTCAPNSVEVSLAMVENSCVQDINFKGGLHADNMLVDAGASRDSSDFCSSMDVNGTGFLNEDDDDADFDDADNDDPNPEDDESLENSGWSVRTRGVAKYLKNLFDEESGQGRKSVVVDHILAGKTRKEASRMFFETLVLKTRDYIQVEQEKPFEYIQIKPRIKLLKSEF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06670	SCC1, MCD1, RAD21	Cell cycle	map04110
K06670	SCC1, MCD1, RAD21	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	103.920
SRP064423	SRR2545915	Juvenile tuber	66.910
SRP108465	SRR5643513	five period of Gastrodia elata	31.930
	SRR5643514	five period of Gastrodia elata	33.350
	SRR5643515	five period of Gastrodia elata	31.570
	SRR5643524	five period of Gastrodia elata	33.530
	SRR5643525	five period of Gastrodia elata	35.580
	SRR5643528	five period of Gastrodia elata	37.830
	SRR5643658	five period of Gastrodia elata	41.070
	SRR5643659	five period of Gastrodia elata	27.110
	SRR5643660	five period of Gastrodia elata	31.410
	SRR5643661	five period of Gastrodia elata	26.740
	SRR5643662	five period of Gastrodia elata	26.800
	SRR5643663	five period of Gastrodia elata	28.440
	SRR5643664	five period of Gastrodia elata	29.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.720
SRP279888	Gastro	Gastrodia elata tuber	32.94
	Juven	Juvenile tuber	42.12
	Mother_Gastro	Mother tuber of Gastrodia elata	46.10
	Mother_Juven	Mother tuber of Juvenile	67.73