Gene detail

Detail information of GWHGAAEX014786/evm.TU.scaffold_62.47

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0798	8.00E-109	Uncharacterized conserved protein
nr	gi\|743762589\|ref\|XP_010908883.1\|	2.63E-180	PREDICTED: sister chromatid cohesion protein DCC1 [Elaeis guineensis]
trEMBL	tr\|M0T8Y5\|M0T8Y5_MUSAM	2.00E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P21370_001}
TAIR	AT2G44580_1	8.00E-109	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000060	2235830	2253705	+

Transcript Sequence
>GWHTAAEX014786 GCGGATTTCTACGGCTTGCCCTAACCTATATGGCGGGAAAATTCTCTTGCATGTGATGGATCTTATATGATTTTATCCCTTGCCCTAGCAGATAATGGCGCGAAATTTCTTTAACCCATATGTCCTCTGATATGGAATTTCAGGAGGAAGGCGAAAGAGTTTGGGTTGGTCGAGCGGAAGCTGTGCTGAGCCTCACGCCGGGCTCCTCGATCTCCATCTGTTACCACTCCCAATTCGGCCTTCACGACGATCTCATTCTCTTAGAGGTTGACGGAAAGCTTCTTCCTGATATTCTTCAAAATCGGGCTTCAATTCGAGGACAGCCTGATGAGGATGCTATACTTTGCACATATTCTTCCACACATGCTATGAAGTTTGTAGGCACGTCCAACTCTATGTTCTTGATCCCTTCAGGCGACCCTGCCACTCCAACCACTACATCTTTGTCCTGCAATAATGAAACAAGCTGCCCCGCTTCTGTCATCACTGTTGCACCGGGAAGCATTGAGTTGAACGAAGCAGCTCCAAAGCTTGATAAGCTAAAGAAACTTCTCAGAGAACGGCCTTATAATCTTGAAGAAGGTTATGAATTGAATCCAAGGCACATGGAAGGGCTGTGCAGGTGGCGAGACCTCGTTGAGACCATCCAAGCTAGTGAAGAAGAGCTAAGAGATGCACTGAAGTCCCTCTCTGCCGTCGACATTGATGGATATTGGAGGATTATTGATGATAAAACTATGAACGAAACATTAGATATGATCCTACGCAACTCGGTCTTGCATGGCTGGCAATTAAGCGCCCTCAATGAAGAGCACGTTCTGTCTGTTTTGGAGGCTGATGGTTTTCCACCCAGAATAGTATCACACTGCCTTGAAGCTCTTGGAAGAAAGGTACATGCCTCTAATGGCGCTTTATGGGGTTTGGAAGAAAAGAAGGTATGCCTGCAGTTAGCTCTTCGTGTTTTGAGCGGAGGAAAGATGAAGCTGGAGAGCTTCATGGAAAAGTGGGAGCAAAGTGTTCCTTCAGGCATGAGGCCGGATTTGAAAATGCTTCGAGGAGAGGTTCTGTATGACAAAATCGGTGTTGAGGTTTGGATTCGTGTTTTCAAGGTTTCTAATCTTCCTTCAGCTCCAGAGGACCGCTTCGCCGCCTTGTTTCAGGAGCGGCCCAAGTGGGAATGGAAGGACCTGGAGCCCTTTATCTTGGATTTACAAGTTCCCGGCCTCTCTTCAGAAGCTTTGCTTATCAAATATACTCGTCGAACACAGCCACATGCCGATGCTGAACCTATATTTAGTTCAAGATAGATAGACGTGGGTTTGTTTTTAAGTTTTTTCAACTCTTTTCTTATTATGTCTGTACAATCTTCCTGGTGTTAGCATATAAAGGTCCTCCAAGAAGCCATCATTAGCCACATGGTCTACAAATCCTTAAAAAGACAAAATATACCAGGAATAGTTCTTTTTGGTATTAGAAAAGGACGAGTCCAAGGAGAAATTAATGAACAAGAACATAACGATAGTGCAAACTCGAGAAAATTTTAAACCTCAACTTGAGGAGCTGATTCCTTTCAAGGGGAAATTAAGATGAAGAACTAATATGAGCTTGAGCTAATTCCAGTTGAAGAAATCTTTTGGTTTTATTTTAATTATGTTTTTTAGCCTCTGTGGATGATCAACTCACTCTAGCCCCTACCGAATGAAAATCAAAGTAGACCAATGCTTATGGACTCCATTTGAGCAATCCCATGACAAACAATCCTAACGTGTGTTCGCCAAGTGAGCTCTTGTTTTGGCTAGGTCTTACATTGCCATTCATATGCAGAAAGCACGATTTCAAGCATGATTCCCAGCATTGTTTTTTAACTAATTTGGAATATTTTCAATCATTTCTAATAGTTTCAACTACTTGGTCTTGCAATTAGGGCTTCTTATTTAGCTGATTCAAGAATTATCATATTGTGTTTAGGATCTCTTCTAATTGTAAACATGTTCCTACTATTAGTTATGGTGAAAACACCATAAAAAGATATATCCTAACGTAGGTCTATTCACTATCCAAATTAC

Network for GWHGAAEX014786

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09724.8	Dcc1	47	361	6.50E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007064	Biological Process	mitotic sister chromatid cohesion
GO:0031390	Cellular Component	Ctf18 RFC-like complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.510
SRP064423	SRR2545915	Juvenile tuber	4.990
SRP108465	SRR5643513	five period of Gastrodia elata	5.580
	SRR5643514	five period of Gastrodia elata	4.050
	SRR5643515	five period of Gastrodia elata	3.440
	SRR5643524	five period of Gastrodia elata	3.750
	SRR5643525	five period of Gastrodia elata	3.380
	SRR5643528	five period of Gastrodia elata	2.410
	SRR5643658	five period of Gastrodia elata	3.890
	SRR5643659	five period of Gastrodia elata	7.590
	SRR5643660	five period of Gastrodia elata	8.790
	SRR5643661	five period of Gastrodia elata	8.410
	SRR5643662	five period of Gastrodia elata	6.650
	SRR5643663	five period of Gastrodia elata	6.990
	SRR5643664	five period of Gastrodia elata	5.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.990
SRP279888	Gastro	Gastrodia elata tuber	4.56
	Juven	Juvenile tuber	4.26
	Mother_Gastro	Mother tuber of Gastrodia elata	4.24
	Mother_Juven	Mother tuber of Juvenile	2.14