Gene detail

Detail information of GWHGAAEX014788/evm.TU.scaffold_62.48

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743806959\|ref\|XP_010927902.1\|	3.68E-100	PREDICTED: LOW QUALITY PROTEIN: protein IQ-DOMAIN 14-like [Elaeis guineensis]
Swissprot	tr\|Q8LPG9\|IQD14_ARATH	2.00E-49	Protein IQ-DOMAIN 14
trEMBL	tr\|M0TVH4\|M0TVH4_MUSAM	2.00E-93	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P32220_001}
TAIR	AT3G59690	3.00E-67	IQ-domain 13

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000060	2264586	2284136	+

Transcript Sequence
>GWHTAAEX014788 ATGTGGAAGAAAGGTGGTTGGATCTCTGCTTTGAAAAAGGCCTTCACCCATACAAAATCCAAAGAGAAGTTTGACACAGCACCTGGCACCTATGGGAAGGAGAAGAAAATGCTGGGACAAAGGCGGAAAGAACTTGGAGACGTAAATTCCTTTGTCCCATTTTATAGAGAGCCAAGCAGCATTGAGAAAATCTTGGACGATGTTGAGAAAGAGCAGAAATATAAGGCACATAAAGGGACAAACAAAAGCCTGCAGCCAAAATCTACAATAATGAAACAAAATGCCAGTACTAACACATCAAAAAATGCAGCTTCAGATAAGGCTGAGACTATCTCTTCAAGCAAGAAGTCGATGGCTGCTCCAGGCAAAGAAAAATTAATTGTTCCAAGCAAACAAGCAATCACACACCGCAGTAATCCCATCACATCAAATTATGTTCATATTTCTGCAACCAAGATTCAGGCAGCTTACAAGGGTTATATGGCTAGGAGAAATTATACAGCACTAAGAGGTCTGCTACGCCTCAAGAACATGATGAAAGGGCACAGCGTAAAGCGTCAGACAATGAACACTATGAAAAGCATGCAGCTCCTTGTGAGAATTCAAACACAAATTCATGAAAGGAGGATTCAGATGATGGAGAACCAAAACCTCCGTAAACATGAGATACCTAGGAGTAGCGGCAAAGAAACCTTTGGCAGCTCAAGCAAGTGGATTCCCACTAATCAGTTGGAGCGACAACCATATGAAGAGTGGGATGACAGCATACTGACAAAGGAGGAGAGATATGCCAGTGCTAAAAGAAAGATTGAGGCTGTCATAAAAAGGGAAAGAGCTTTAGCATATGCATACTACCATCAGTCGCAAACAACAACCCCTGCGCTCATCGATGTACAGTCAGGAGGAGCCCTCCCAGTGTGGTGGAAAAATTGGTTCGAGCGGTCGATCCCTTCAGACACTAACAAGGCCAAGACCCTCACGCCAAGAATCTCCAAACTAATTCGCACGCGCTCCTCGAACAGGTTGCAGAGGACACGCACCAGGACCAGCATTAGGGACGACGAGAGCCTCACAAGCTGCCCGGCCATAGCAGATACATTAACAGAAGCAGTCCCAAGTTACATGGCTTCCACGTTCTCCGCAAACGCCAAGGTAAGAAGCAGCGCCTTGGAAAGCGGCGGAGGAGCGAAGGGGGTTAAGAAGCGGTTTTCGTTCGCGCTTAGCCAAGGCATCGGCTCCATGGGATTGTTCTCTGCAATAAAGGGAGCCGCTCCAGGCGGAAGGCATCGATCGAAACCATCGACTGGGGCACTAAGCGTGGATTCCACAGTCTCCCTTCCGGCGGGGTTGGGTCCTTTGGGAGCGAGACCTTGCAGGTAACCAACCTAATGCATTGACACACTTTAGAAATGGGTCAATTGATTTGATTAAAATAAATTCAGTGTATTCACAATAAATAAGTGTGCTAAAAAAGAGAAATGTTGGCTTTGATACAATGGAATTCGGGACTTTTGATTGGCTCTATATTTTCTTTTTTATTGTATTTGTTATGATTTTATTGTTGTTTTTTCATTTTTCTATATTAAATAAGCATGATTATTAATTTTAGTTATTGTATGGCTAACAAGTTTGGTTGATGTCTTGAGCATCTGAGGAC

Network for GWHGAAEX014788

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00612.26	IQ	149	166	1.80E-05
PF13178.5	DUF4005	343	388	2.60E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.440
SRP064423	SRR2545915	Juvenile tuber	3.560
SRP108465	SRR5643513	five period of Gastrodia elata	2.340
	SRR5643514	five period of Gastrodia elata	3.430
	SRR5643515	five period of Gastrodia elata	2.910
	SRR5643524	five period of Gastrodia elata	2.390
	SRR5643525	five period of Gastrodia elata	55.070
	SRR5643528	five period of Gastrodia elata	40.280
	SRR5643658	five period of Gastrodia elata	80.930
	SRR5643659	five period of Gastrodia elata	3.390
	SRR5643660	five period of Gastrodia elata	2.960
	SRR5643661	five period of Gastrodia elata	3.540
	SRR5643662	five period of Gastrodia elata	3.130
	SRR5643663	five period of Gastrodia elata	3.630
	SRR5643664	five period of Gastrodia elata	3.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.070
SRP279888	Gastro	Gastrodia elata tuber	4.62
	Juven	Juvenile tuber	4.16
	Mother_Gastro	Mother tuber of Gastrodia elata	3.66
	Mother_Juven	Mother tuber of Juvenile	3.54