Detail information of GWHGAAEX014793/evm.TU.scaffold_62.53


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427723106|ref|YP_007070383.1|3.00E-146peptide chain release factor 2 (bRF-2) [Leptolyngbya sp. PCC 7376]
KOGKOG27260Mitochondrial polypeptide chain release factor
nrgi|695013465|ref|XP_009393515.1|0PREDICTED: peptide chain release factor 1-like, mitochondrial [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LVY0|PRFB1_ARATH0Peptide chain release factor PrfB1, chloroplastic {ECO:0000303|PubMed:21771930} (Precursor)
trEMBLtr|M0SGM4|M0SGM4_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21580_001}
TAIRAT5G361700high chlorophyll fluorescent 109

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006023721222432798+
Transcript Sequence

Network for GWHGAAEX014793

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03462.17PCRF1153011.80E-49
PF00472.19RF-13124201.60E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006415Biological Processtranslational termination
GO:0003747Molecular Functiontranslation release factor activity
GO:0016149Molecular Functiontranslation release factor activity, codon specific
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.480
SRR2545915Juvenile tuber28.050
SRP108465SRR5643513five period of Gastrodia elata17.420
SRR5643514five period of Gastrodia elata20.490
SRR5643515five period of Gastrodia elata16.990
SRR5643524five period of Gastrodia elata18.010
SRR5643525five period of Gastrodia elata12.510
SRR5643528five period of Gastrodia elata9.800
SRR5643658five period of Gastrodia elata13.530
SRR5643659five period of Gastrodia elata19.760
SRR5643660five period of Gastrodia elata22.260
SRR5643661five period of Gastrodia elata22.480
SRR5643662five period of Gastrodia elata24.240
SRR5643663five period of Gastrodia elata23.780
SRR5643664five period of Gastrodia elata27.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.720
SRR6049655Rhizomagastrodiae_C368-T10_good_113.220
SRR6049656Rhizomagastrodiae_C368-T07_good_116.090
SRR6049657Rhizomagastrodiae_C368-T07_good_125.050
SRR6049658Rhizomagastrodiae_C368-T04_good_118.440
SRR6049659Rhizomagastrodiae_C368-T04_good_122.280
SRR6049660Rhizomagastrodiae_C368-T01_good_116.760
SRR6049661Rhizomagastrodiae_C368-T04_good_117.710
SRR6049662Rhizomagastrodiae_C368-T01_good_111.540
SRR6049663Rhizomagastrodiae_C368-T01_good_113.670
SRR6049664Rhizomagastrodiae_C368-T10_good_116.360
SRR6049665Rhizomagastrodiae_C368-T10_good_116.360
SRP279888GastroGastrodia elata tuber 28.18
JuvenJuvenile tuber31.34
Mother_GastroMother tuber of Gastrodia elata 14.35
Mother_JuvenMother tuber of Juvenile 28.13