Gene detail

Detail information of GWHGAAEX014801/evm.TU.scaffold_62.60

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1019	Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly
nr	gi\|672173218\|ref\|XP_008806732.1\|	PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q6A332\|ALY3_ARATH	Protein ALWAYS EARLY 3
trEMBL	tr\|M0T689\|M0T689_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P11910_001}
TAIR	AT3G21430	DNA binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000060	2629610	2741870	-

Transcript Sequence
>GWHTAAEX014801 GCGGGGGGAAAGATCCGCATAGGCTGGCGAGCGAACGGGAAACCGAGCAGGCGGGCAAGGGAAGTTGCAAAGCCGCGAGCGGCGACGCGTGGAGAAGGACACAGTTGAAGACTTCGGCGAACAAGGGCTTGAAACTTGCAAGCGCAAACGAGTTCGTGGACGACCCGCAGTAAATCAAGAAAATAAACTGGAATAAGTGTCTTGATGGCTTCTTCAAGAAAACCTAGAAATGTGAACAAGCGCTTTAGCAAAGTTGTTGAAGAGTTGCAGGAGAAAGATGGAAGCAACCCTAGCAAAAAAACAAAAAAGAGGAAACTTTCGGACATGTTAGGTTCTCAATGGGGCAGAGATGAGCTTGAACGTTTCTATGAAGCTTATCGTAAACATGGAAGAGATTGGAGAAAGATTGCTGCAGCAGTACGAAACAGACCTCCAGAAATGGTGGAAGCTCTTTACAACATGAATAAGGCTTACTTGTCCCTTCCTGAGGGACATGCAACTGCTACTGGATTAATAGCAATGATGACTGATCATTACAATATTCTGGAAGGTAGTGATAGTGAGCAAGAAAGCAATGATGCATCAAAAATTACTCGTAAGACCCCAAAGCGTGGGCGTGGGAAATTTAGACTCATGCCCAAAGGTTCAGATGGGTCTTTTCCAGATCTATTGCAATACCAGGCATCCTCTTCAAGTTATGGGTGCCTGTCTCTATTGAAATGGAAGCGTTCTGGAGATTTACTTGCAGGTTGCAGACCTCGAGCTGTTGGAAAGAGGACCCCTCGTGTTCCTGTTCCATTTTTTCTCAAAGAAGATAAGAATGGGGTAGTTTCATCTAGTAAGCACGGTTTGAAATCAGAGTTTCATGTGATGGATGATGAGGGTGTCCACGTGGCTGCACTTGCGCTGGCTGAGGCTTCACAGCGAGGGGGCTCACCACAGATTTCAAGAACTCCAGACAGAAGGCGTTACCTAAGGAACTCTCCTGTTCCAAGTTGTGAAAATAAGATTGGGAACTCCAAATTCATTAATGGTCAAGTAGATGATGATAATCTTGAAGACAGCTTAGGAAGCAGGGAAGCTGAAAATGGGGAGTTCGTTAAAGAACCAAGCATATCTGGAACACAACAAAAATTAAAGAAAGTGCAAGGGAAGAGACCAAGGAAAGTTGATAATGAACCATTTGATGATGACAGAGAAGCTTGCAGTGGTACTGAGGAAGGTGTTATTGTAAAAAAACTTAAAGATGACACTGAGGTGGATCTCACAGGTGGCAGAGTTCTGCGGTCTTATAAAGGATCTAAGAAGCGAAATCAACAACTGTTTTTTGGCGATGGAAGCTCTGCGCTAGATGCTCTGCAGACATTGGCAGATTTGTCGCTGAACATTTTATTACCAGCTTCTACTGTTGAATCTGAATCCTCCATTCAGATTAAAGAAGATATACAAATAGCAGATATTGATGAGAAACCTAACATACCAGAGTCATTGTCTACAAATCTTCATTGTGAGAGACCTAAAGCTGTTGAAAGTAAAGAGAAAGGGAATTTTGCAACTGATGATGGTGTTGCACGTAAAGGTGCCAACAAATTATCAAAGAGATTACCTCATGACTCTAAAGCTTCTTCAGATTTAAAACAACAAAATGGCTCCTTTAACGCTAAGATACAAAAGAGAAAGACAAAATCAATACTTGAGAAGACTTCAAAATCCCATTTTGAGAGTGATCCACAGAAGAATGAATTTCTTAAGACAGAGGGTGCAACTGAAGAAGGAAAGAGATATTTTGGTAAAGTTAAAAGAGTTTGCCCAATTTCAATGCAGCAAAAACAAGGTAAATATGCTAAATTACAGGAGCACCATTCCACTGCAAGTGATTTGGGAAGAGTGATAGATCCGAACAAAGCAGCTGTAGACGTTCCTTCACAAAATGAAGTAAAATCACCCACAAAATATAGAAACCGTCGAAAAATGAATTTGCTAAAAGCGATAGCAAGAAAAGAGTCAAAAGTCAGTGAAAGTGATTTTGAAGAACATCCTGCCAGATGCCCAATCAGTAATAGATCATATGGACTTAAGGAAACACTTTCTCATTGCTTGTCATCTCCTTTATTACGTAGATGGTGTCAGTTTGAATGGTTCTATAGTGCAATTGATTACCCATGGTTTGCAAAAAGTGAGTTTGTTGAATACTTAAATCATGTCAGACTAGGACACATACCCAGGCTTACACGTGTTGAGTGGGGGGTAATAAGAAGTTCACTTGGCAAGCCACGACGTTTGTCCGACCGATTTTTGCAGCAGGAGCGGGAGAAGTTAGAACTATATCGGGAATCAGTCAGGTCTCATTATTCTGAACTCCGTGCTGGTGTAAGGGAAGGATTGCCAACTGATTTAGCTCGCCCTCTTTCAGTTGGACAGCGAGTTATTGCCTGCCACCCAAGAACGAGGGAAGTTCATGATGGCAGTATCTTAACTGTGAATCGTAATCGATGCAGGGTTCAATTTGATAGACCTGAACTTGGGGTTGAATTTGTGATGGATATTGATTGCATGCCATCAAATCCAGTGGAAAACATTCCTGAAGTTCTACGGGGACAGAATCTTGGCATTAACAAATTCTGTAATGGTTTTTCAGATTATAGATTGGATGAACAAAATGAATTTAAGACAAAAGACAACATGACATTTACTTCTACTGAGAGCTTAGTAGCTGCAGATGGCGCATCTCATTTTGCCTCTTATAGTTATCCCATGAATACATTAATGAATCAAGCTAAGGGGGACACACTTGATGCTATTGTGCAGGCTAAAGCTGCTGTAAATGAAGTTGCTGTGGCTGCACAGCAGGCCATGTATAGTCAACCTTTTACTTTGGCTCAGATACAAGCAAGGGAAGCTGATATTAGAGCACTTGCAGATTTGTCTCGCACTCTTGATAAAAAGGAAGCATTGCTACTAGAACTGAGGCAAATGAATGAAGAAGTCTCTACTAAACAAAAGAATGGTGATCATATCGCCGATTTGGAAACATTTAGAAAGCAATATGCTACGGTTCTCTTACAGCTTAAAGATGCTAATGATCAGGTTGCTTCTGCATTACTGTTTTTAAGACAGCGTAATACATATGAGAGGAATTCGACTCTTACATGGAATAAGTCAAATGAAACCTCTGTCCAGCAGGGCTCCACCTTCAGTCCCTCAGCTTGTTTTACAAATGATTCACGATCTAATGTTTTCGAAGTTGTTCAATGCTCTAGGCAAAAAGCTAAGACAATGGTTAATGTAGCTGTCCAGGCAATGCATGCCCTTAAAGATGGAGAAGATGCTTTTGTTAGAATTGGAGAGGCTTTAGACCTTGCAAGTAACCGAAATCCTGGTTCAACTTCTGCCATTGCGGCAGTTAGAAATACTTTTTCTGATGCAACACCTTGCAACAGACCTTATCAGGATTATGGCTCAATTAACTTAGACGCAGCCACTGTTCAGGCATCTAGCCAGAAATTTCAATGTTTAACTAATGGAACTGACGTTCACTGCCCATCTGAACTAATTTCATCTTGTGTGGCTACACTGTTCATGATACAGATGTGCACGGAGAAGCAGTACCCTCCAGCCGAGGTTGCTCAAATTCTCGATTCTGCTGTACTTAACTTACAACCATGCTGCCCTCAGAATCTTCCTATTTTCCGAGAGATAGAGACATGCATGGGAATCATCAAAAACCAAATGCTTGCTCTTGTTCCAACACCTACTACCATGTCTGCTTCAGATGCCACACCTCTTTTGTAGAAATGAACAATCCAGGTTGAGCCTCTGCAGATTGTGCACGGAAACACAACTCCCAGCGGAGGTTGCTCGTGTCCTTGATTCTGCTTGTGGGAAACCTGCAGCCATATGCTCTCGGAAATTTCATATTTTCAGCTATAGAAATGTGTGCATGGGAGGAATCATCAAGGACCCAGATGCTTTCTATTGTGCCCACTACTAAAACAACTGCCATGGCTGCCTCAGACGCCGCACCTCGTTTGTAGAAAAAAAATTATGTTTTCTTCTGTTTATTTTTTTCAATTCTGTTCATATTCTGAACTCAATCTCATAATAATGATAATATTAATAATAATCGTAATTATAATAATGTTCTTGTTAACTAGGATCATGGTGGAACTCACATGTATAGTTCAGAAAGCTCATCAACCTTGCTTTAGTCTGCTTTCATTTTATTCTCTAATCGGCATGGCCATGC

Network for GWHGAAEX014801

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	45	85	1.30E-06
PF06584.12	DIRP	646	746	8.60E-32

Protein Sequence

>GWHPAAEX014801
MASSRKPRNVNKRFSKVVEELQEKDGSNPSKKTKKRKLSDMLGSQWGRDELERFYEAYRKHGRDWRKIAAAVRNRPPEMVEALYNMNKAYLSLPEGHATATGLIAMMTDHYNILEGSDSEQESNDASKITRKTPKRGRGKFRLMPKGSDGSFPDLLQYQASSSSYGCLSLLKWKRSGDLLAGCRPRAVGKRTPRVPVPFFLKEDKNGVVSSSKHGLKSEFHVMDDEGVHVAALALAEASQRGGSPQISRTPDRRRYLRNSPVPSCENKIGNSKFINGQVDDDNLEDSLGSREAENGEFVKEPSISGTQQKLKKVQGKRPRKVDNEPFDDDREACSGTEEGVIVKKLKDDTEVDLTGGRVLRSYKGSKKRNQQLFFGDGSSALDALQTLADLSLNILLPASTVESESSIQIKEDIQIADIDEKPNIPESLSTNLHCERPKAVESKEKGNFATDDGVARKGANKLSKRLPHDSKASSDLKQQNGSFNAKIQKRKTKSILEKTSKSHFESDPQKNEFLKTEGATEEGKRYFGKVKRVCPISMQQKQGKYAKLQEHHSTASDLGRVIDPNKAAVDVPSQNEVKSPTKYRNRRKMNLLKAIARKESKVSESDFEEHPARCPISNRSYGLKETLSHCLSSPLLRRWCQFEWFYSAIDYPWFAKSEFVEYLNHVRLGHIPRLTRVEWGVIRSSLGKPRRLSDRFLQQEREKLELYRESVRSHYSELRAGVREGLPTDLARPLSVGQRVIACHPRTREVHDGSILTVNRNRCRVQFDRPELGVEFVMDIDCMPSNPVENIPEVLRGQNLGINKFCNGFSDYRLDEQNEFKTKDNMTFTSTESLVAADGASHFASYSYPMNTLMNQAKGDTLDAIVQAKAAVNEVAVAAQQAMYSQPFTLAQIQAREADIRALADLSRTLDKKEALLLELRQMNEEVSTKQKNGDHIADLETFRKQYATVLLQLKDANDQVASALLFLRQRNTYERNSTLTWNKSNETSVQQGSTFSPSACFTNDSRSNVFEVVQCSRQKAKTMVNVAVQAMHALKDGEDAFVRIGEALDLASNRNPGSTSAIAAVRNTFSDATPCNRPYQDYGSINLDAATVQASSQKFQCLTNGTDVHCPSELISSCVATLFMIQMCTEKQYPPAEVAQILDSAVLNLQPCCPQNLPIFREIETCMGIIKNQMLALVPTPTTMSASDATPLL

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	90.640
SRP064423	SRR2545915	Juvenile tuber	56.060
SRP108465	SRR5643513	five period of Gastrodia elata	16.880
	SRR5643514	five period of Gastrodia elata	13.130
	SRR5643515	five period of Gastrodia elata	15.190
	SRR5643524	five period of Gastrodia elata	13.800
	SRR5643525	five period of Gastrodia elata	18.110
	SRR5643528	five period of Gastrodia elata	16.950
	SRR5643658	five period of Gastrodia elata	22.810
	SRR5643659	five period of Gastrodia elata	18.800
	SRR5643660	five period of Gastrodia elata	20.100
	SRR5643661	five period of Gastrodia elata	17.440
	SRR5643662	five period of Gastrodia elata	17.130
	SRR5643663	five period of Gastrodia elata	17.630
	SRR5643664	five period of Gastrodia elata	19.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.290
SRP279888	Gastro	Gastrodia elata tuber	21.59
	Juven	Juvenile tuber	38.47
	Mother_Gastro	Mother tuber of Gastrodia elata	21.54
	Mother_Juven	Mother tuber of Juvenile	38.01