Detail information of GWHGAAEX014803/evm.TU.scaffold_62.64
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0118 | 3.00E-71 | FOG: RRM domain |
| nr | gi|672204456|ref|XP_008778920.1| | 2.43E-109 | PREDICTED: la protein 1 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q93ZV7|LA1_ARATH | 4.00E-77 | La protein 1 |
| trEMBL | tr|C5YBH2|C5YBH2_SORBI | 1.00E-100 | Putative uncharacterized protein Sb06g021470 {ECO:0000313|EMBL:EES12447.1} |
| trEMBL | tr|C5YBH2|C5YBH2_SORBI | 2.00E-23 | Putative uncharacterized protein Sb06g021470 {ECO:0000313|EMBL:EES12447.1} |
| TAIR | AT4G32720 | 3.00E-71 | La protein 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000060 | 2920332 | 2931934 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014803
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05383.16 | La | 13 | 59 | 1.90E-19 |
| PF00076.21 | RRM_1 | 122 | 175 | 4.30E-07 |
| PF08777.10 | RRM_3 | 450 | 542 | 3.00E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:1990904 | Cellular Component | ribonucleoprotein complex |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 88.720 |
| SRR2545915 | Juvenile tuber | 101.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.730 |
| SRR5643514 | five period of Gastrodia elata | 35.800 | |
| SRR5643515 | five period of Gastrodia elata | 35.950 | |
| SRR5643524 | five period of Gastrodia elata | 32.470 | |
| SRR5643525 | five period of Gastrodia elata | 18.320 | |
| SRR5643528 | five period of Gastrodia elata | 19.130 | |
| SRR5643658 | five period of Gastrodia elata | 13.450 | |
| SRR5643659 | five period of Gastrodia elata | 64.850 | |
| SRR5643660 | five period of Gastrodia elata | 75.930 | |
| SRR5643661 | five period of Gastrodia elata | 74.060 | |
| SRR5643662 | five period of Gastrodia elata | 69.330 | |
| SRR5643663 | five period of Gastrodia elata | 65.430 | |
| SRR5643664 | five period of Gastrodia elata | 71.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 64.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 57.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 70.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 68.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 70.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 69.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 70.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 61.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 69.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 48.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 48.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 57.90 |
| Juven | Juvenile tuber | 61.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.87 | |
| Mother_Juven | Mother tuber of Juvenile | 41.34 |