Detail information of GWHGAAEX014808/evm.TU.scaffold_62.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297620951|ref|YP_003709088.1| | 7.00E-13 | RNA-binding protein [Waddlia chondrophila WSU 86-1044] |
| KOG | KOG0119 | 0 | Splicing factor 1/branch point binding protein (RRM superfamily) |
| nr | gi|672111632|ref|XP_008801638.1| | 0 | PREDICTED: branchpoint-bridging protein-like [Phoenix dactylifera] |
| Swissprot | tr|Q8GWR3|QKIL5_ARATH | 3.00E-27 | KH domain-containing protein At1g09660/At1g09670 |
| trEMBL | tr|A0A0A0KXK7|A0A0A0KXK7_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN53152.1} |
| TAIR | AT5G51300 | 0 | splicing factor-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000060 | 3250373 | 3255726 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014808
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16275.4 | SF1-HH | 148 | 257 | 5.10E-27 |
| PF00013.28 | KH_1 | 276 | 349 | 6.60E-06 |
| PF00076.21 | RRM_1 | 485 | 554 | 7.60E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.230 |
| SRR2545915 | Juvenile tuber | 42.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.270 |
| SRR5643514 | five period of Gastrodia elata | 49.630 | |
| SRR5643515 | five period of Gastrodia elata | 46.590 | |
| SRR5643524 | five period of Gastrodia elata | 48.640 | |
| SRR5643525 | five period of Gastrodia elata | 40.380 | |
| SRR5643528 | five period of Gastrodia elata | 26.890 | |
| SRR5643658 | five period of Gastrodia elata | 40.460 | |
| SRR5643659 | five period of Gastrodia elata | 48.690 | |
| SRR5643660 | five period of Gastrodia elata | 64.890 | |
| SRR5643661 | five period of Gastrodia elata | 51.000 | |
| SRR5643662 | five period of Gastrodia elata | 41.100 | |
| SRR5643663 | five period of Gastrodia elata | 55.840 | |
| SRR5643664 | five period of Gastrodia elata | 49.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 60.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 59.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 60.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 61.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 68.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 67.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 63.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 65.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 46.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 46.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 84.00 |
| Juven | Juvenile tuber | 80.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 72.04 | |
| Mother_Juven | Mother tuber of Juvenile | 97.96 |