Gene detail

Detail information of GWHGAAEX014809/evm.TU.scaffold_62.71

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743803163\|ref\|XP_010926848.1\|	6.04E-144	PREDICTED: TITAN-like protein [Elaeis guineensis]
Swissprot	tr\|F4JRR5\|TTL_ARATH	9.00E-93	TITAN-like protein
trEMBL	tr\|F6GSV9\|F6GSV9_VITVI	4.00E-114	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43328.1}
TAIR	AT4G24900	6.00E-91	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000060	3270411	3296175	+

Transcript Sequence
>GWHTAAEX014809 CACAGATTTTTTTATAGCTTAATTCTATTTTAACTAGTCTTCATTTCAATCGGGTAAGTTAGTTTTACTGAGATTTGCCAAGTCCTCTTGGCCACAAAGCAACGGCGGCGACGAGCAGACGGCATCGCCCACCCCGGCGAGATCTTCATTCGCGTAAAAGATAAGGAACGACGGGATGAAGGGAAAAGGTTTATCCTTCGAGTTCTGCGACGTTTGCAATCTAAACCACGACCAAGGGCTCCGTCACAAGTACTTCCCCTCGCATTGCCGCGCCCTCACTAACACTCTGTCTCGCTTTCTGAAGAAAATTTCCGAATTCCAATTCTTCATCCAAAATCCCATCCTTCTGCGTCCAGAGCACGCTGCTCTCAATCGTATCTGGTGTGTCTTCTGCGCTCGCAACGTCAGCGAGATTGGAGGCTCTTTCGTTTGTGGCAATGCAATTCGCCACTTGGCGAGTGAGGAACACTTTTGTAATCTTAAGAGGTTTCTTTGGAAGCACGGGAAAGGGGCATATCAGGTCGATGTTTTCAGAGTTTCCGAGGAAAATTTCTTGAAGTGGGAGAAGGGATGCAAGGCATTGGATGTTGTTGCTTCAAGTTCAAGTGAAGGGCCTGTAGGACCAGTTTTGGGGCCATGTAAAGATATCCAAATCCAACATGAGCTTAACTCGAATAATATGGATAGTTTTGATAACCTTTCTAGTAGTTCTTTTAGTTCAAACAATGCTCATTCTGTTTTACCTTTACAAAGATTCACAAATGAGAATCATTCGGTATGCCCCTCAACTAGTAATGGCTGTGCAACTGCTCCACATGTCGCCCAGTGCTCCCTTCCTTTGCCATCGTGCATGCAGGGAAGTGCGTTCTTTGACCACATGAGTGGCTTGAAAAGTATAGCCAATCATCTAACTGGTGCTCACTTCAATGGGGTGAACTTTAAAGAAAGAGGAGAACCCGTGGACAATACAGTGTATGATTGCGGAATTGATGACAGGCCTAGCAGTGGAGCTTTGCAGATGCTTACTCAGTTTGCGCTGCCTTCTAAAGGATCTCTGGCAAATGTACATACCGGTGGTCTGCCTCCTTGGTTAGATATGTCTGATGAACATGAGAAAAATCTTATTAACTTTGGAGCACCTGAGAATAACCACACTCCTATAGTACCCAAGGGGAAGTCTAAGAAGTTAAACCCTCATCGTGTAGGGGCTGCATGGGCAGAGAAGAGAAGAATTGAACTTGAAATGGAGAAAACTGGTAAGATTGCTATGGATACTGTTGATGCCAATTGGCTTCCCAATTTTGGAAGAGTTTGGCAAGCAGGCACTCGCAGGGAATCTAGAAAAGAATTTGAGATGGAAAATCACAAGTCGTTTAAGGATGAATTTCATTCAGAGGCATCATTGAAGCTACAACCATATACAAGTAAACGAATGCGAATGAGTTCTTCCGGAAAATCCTAAGAACTGCCGGTCCATTTGTACAAGCAGCAGTGGAACTGTGGCTTATCAGAGAACCTACGCCTGTGTATATAATCAAATCAAATCTAAGCCACGCCCTCTATTCAGCGTCAACTAATTCGAACGATTTTCCTCAAATATTTTGGGTTGTAGAAGATTATTCCCCCTTTTAGCTTGATTTAGCCTTTTCTCTTTTAAAATTCTTGTTTCAGTAGTCTTCGTCCTTGTTATTTATGAGTAAAAACAACGTGTATAGTTTTTCTTAATAGGATTGTTCACCATCTCATGTTCCTTTAGGTATGTATATTATATATTCCCATCTTATAACAGTTGGTATATGAATTGATTTCCTCGCTATTTTAAAACAGCAGGTTGTGCTAGGTCTTATAAATACTGTATAAAAGTGGATTTAGATATA

Network for GWHGAAEX014809

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14968.5	CCDC84	10	398	1.10E-97

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.970
SRP064423	SRR2545915	Juvenile tuber	4.160
SRP108465	SRR5643513	five period of Gastrodia elata	6.310
	SRR5643514	five period of Gastrodia elata	6.380
	SRR5643515	five period of Gastrodia elata	6.040
	SRR5643524	five period of Gastrodia elata	7.310
	SRR5643525	five period of Gastrodia elata	9.430
	SRR5643528	five period of Gastrodia elata	6.910
	SRR5643658	five period of Gastrodia elata	7.100
	SRR5643659	five period of Gastrodia elata	4.190
	SRR5643660	five period of Gastrodia elata	4.670
	SRR5643661	five period of Gastrodia elata	3.760
	SRR5643662	five period of Gastrodia elata	5.420
	SRR5643663	five period of Gastrodia elata	4.010
	SRR5643664	five period of Gastrodia elata	4.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.940
SRP279888	Gastro	Gastrodia elata tuber	6.40
	Juven	Juvenile tuber	6.06
	Mother_Gastro	Mother tuber of Gastrodia elata	9.37
	Mother_Juven	Mother tuber of Juvenile	16.91