Detail information of GWHGAAEX014815/evm.TU.scaffold_62.80
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|182678924|ref|YP_001833070.1| | 2.00E-90 | multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] |
| KOG | KOG0519 | 0 | Sensory transduction histidine kinase |
| nr | gi|672134216|ref|XP_008790756.1| | 0 | PREDICTED: histidine kinase 3-like [Phoenix dactylifera] |
| Swissprot | tr|Q9C5U1|AHK3_ARATH | 0 | Histidine kinase 3 |
| trEMBL | tr|M0U7E8|M0U7E8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP08370_001} |
| TAIR | AT1G27320 | 0 | histidine kinase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000060 | 3612918 | 3617364 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014815
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03924.12 | CHASE | 130 | 320 | 2.60E-37 |
| PF00512.24 | HisKA | 408 | 473 | 1.00E-17 |
| PF02518.25 | HATPase_c | 520 | 682 | 2.10E-29 |
| PF00072.23 | Response_reg | 851 | 921 | 4.40E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Others |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14489 | AHK2_3_4 | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0007165 | Biological Process | signal transduction |
| GO:0016310 | Biological Process | phosphorylation |
| GO:0016772 | Molecular Function | transferase activity, transferring phosphorus-containing groups |
| GO:0000155 | Molecular Function | phosphorelay sensor kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 235.270 |
| SRR2545915 | Juvenile tuber | 288.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 105.540 |
| SRR5643514 | five period of Gastrodia elata | 86.190 | |
| SRR5643515 | five period of Gastrodia elata | 81.670 | |
| SRR5643524 | five period of Gastrodia elata | 77.170 | |
| SRR5643525 | five period of Gastrodia elata | 97.180 | |
| SRR5643528 | five period of Gastrodia elata | 74.090 | |
| SRR5643658 | five period of Gastrodia elata | 112.340 | |
| SRR5643659 | five period of Gastrodia elata | 106.150 | |
| SRR5643660 | five period of Gastrodia elata | 125.350 | |
| SRR5643661 | five period of Gastrodia elata | 88.460 | |
| SRR5643662 | five period of Gastrodia elata | 73.880 | |
| SRR5643663 | five period of Gastrodia elata | 91.980 | |
| SRR5643664 | five period of Gastrodia elata | 111.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 145.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 102.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 110.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 210.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 182.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 209.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 173.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 160.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 59.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 76.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 67.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 67.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.85 |
| Juven | Juvenile tuber | 96.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.23 | |
| Mother_Juven | Mother tuber of Juvenile | 30.35 |