Detail information of GWHGAAEX014818/evm.TU.scaffold_62.87


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672134190|ref|XP_008790742.1|1.90E-97PREDICTED: transcription factor TCP20-like [Phoenix dactylifera]
Swissprottr|Q9LSD5|TCP20_ARATH4.00E-64Transcription factor TCP20
trEMBLtr|M0S3K7|M0S3K7_MUSAM9.00E-85Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P27500_001}
TAIRAT3G270101.00E-63TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006040866894087967+
Transcript Sequence

Network for GWHGAAEX014818

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03634.12TCP632694.00E-31
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTCP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.080
SRR2545915Juvenile tuber26.580
SRP108465SRR5643513five period of Gastrodia elata20.340
SRR5643514five period of Gastrodia elata19.130
SRR5643515five period of Gastrodia elata18.960
SRR5643524five period of Gastrodia elata18.320
SRR5643525five period of Gastrodia elata31.970
SRR5643528five period of Gastrodia elata24.090
SRR5643658five period of Gastrodia elata28.880
SRR5643659five period of Gastrodia elata23.340
SRR5643660five period of Gastrodia elata24.250
SRR5643661five period of Gastrodia elata20.540
SRR5643662five period of Gastrodia elata26.810
SRR5643663five period of Gastrodia elata22.900
SRR5643664five period of Gastrodia elata25.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_137.860
SRR6049655Rhizomagastrodiae_C368-T10_good_142.690
SRR6049656Rhizomagastrodiae_C368-T07_good_132.970
SRR6049657Rhizomagastrodiae_C368-T07_good_146.610
SRR6049658Rhizomagastrodiae_C368-T04_good_148.830
SRR6049659Rhizomagastrodiae_C368-T04_good_164.000
SRR6049660Rhizomagastrodiae_C368-T01_good_147.390
SRR6049661Rhizomagastrodiae_C368-T04_good_147.280
SRR6049662Rhizomagastrodiae_C368-T01_good_131.210
SRR6049663Rhizomagastrodiae_C368-T01_good_137.990
SRR6049664Rhizomagastrodiae_C368-T10_good_128.260
SRR6049665Rhizomagastrodiae_C368-T10_good_128.260
SRP279888GastroGastrodia elata tuber 28.56
JuvenJuvenile tuber47.83
Mother_GastroMother tuber of Gastrodia elata 21.73
Mother_JuvenMother tuber of Juvenile 32.35