Detail information of GWHGAAEX014836/evm.TU.scaffold_63.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262198353|ref|YP_003269562.1| | 4.00E-58 | exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] |
| KOG | KOG3242 | 2.00E-93 | Oligoribonuclease (3'->5' exoribonuclease) |
| nr | gi|695006236|ref|XP_009389601.1| | 1.53E-121 | PREDICTED: oligoribonuclease isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9ZVE0|ORN_ARATH | 3.00E-95 | Oligoribonuclease |
| trEMBL | tr|M0S5V1|M0S5V1_MUSAM | 6.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P07100_001} |
| TAIR | AT2G26970 | 2.00E-93 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 95759 | 146448 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014836
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00929.23 | RNase_T | 100 | 262 | 1.40E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13288 | orn, REX2, REXO2 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0000175 | Molecular Function | 3'-5'-exoribonuclease activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.880 |
| SRR2545915 | Juvenile tuber | 15.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.880 |
| SRR5643514 | five period of Gastrodia elata | 13.890 | |
| SRR5643515 | five period of Gastrodia elata | 14.230 | |
| SRR5643524 | five period of Gastrodia elata | 14.330 | |
| SRR5643525 | five period of Gastrodia elata | 17.450 | |
| SRR5643528 | five period of Gastrodia elata | 18.350 | |
| SRR5643658 | five period of Gastrodia elata | 13.520 | |
| SRR5643659 | five period of Gastrodia elata | 15.980 | |
| SRR5643660 | five period of Gastrodia elata | 18.240 | |
| SRR5643661 | five period of Gastrodia elata | 16.890 | |
| SRR5643662 | five period of Gastrodia elata | 24.260 | |
| SRR5643663 | five period of Gastrodia elata | 19.950 | |
| SRR5643664 | five period of Gastrodia elata | 17.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.49 |
| Juven | Juvenile tuber | 17.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.94 | |
| Mother_Juven | Mother tuber of Juvenile | 18.16 |