Gene detail

Detail information of GWHGAAEX014842/evm.TU.scaffold_63.10

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434388016\|ref\|YP_007098627.1\|	3.00E-16	WD40 repeat-containing protein [Chamaesiphon minutus PCC 6605]
KOG	KOG0266	0	WD40 repeat-containing protein
nr	gi\|743808420\|ref\|XP_010928336.1\|	0	PREDICTED: protein TOPLESS-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q0WV90\|TPR1_ARATH	0	Topless-related protein 1
trEMBL	tr\|U5D326\|U5D326_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN16630.1}
TAIR	AT1G15750	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	241987	265058	-

Transcript Sequence
>GWHTAAEX014842 CCCCACCGCAAACCCCAACAGCTCTCTTCCTTCCCCAATTCCCATCCTTTTCTTCTAATCGCCTCTCCTCTTCGTCCTCGGCTCCTCCTGTACTTGACTGCGATTTATTCGTCTTTTTTCTCGTTTTTTCTCGAGCTCTAGTCGGAAGAGGGCTCTCCATCGATCGATCCAGGGCGGGCTTCGCGCATCCCTTGGCGATCCGAATCGTCACCGTGGGATTTATTCGCCGTGACCGGATTTCCGATCCGCAGCAGCCCTGGTCCTGCCGTTTCCATCTGACCATGAGTTCTCTCAGCAGAGAACTCGTGTTCCTCATACTGCAGTTCCTGGACGAGGAGAAGTTCAAGGAGACGGTCCACAAGTTGGAGCAAGAGTCGGGCTTTTTCTTCAATATGAAGCACTTTGAGGAGACGGTGCTTGGCGGGGAATGGGAGGAGGTCGAGAGGTACCTCTCAGGGTTTACGAAGGTGGACGATAACCGGTATTCGATGAAGATTTTCTTTGAGATAAGAAAACAGAAGTATCTCGAGGCCTTGGATAAGAAAGAAAGGGCTAAGGCTGTGGACATACTGGTGAAGGATCTAAAGGTCTTTGCGGCTTTTAATGAGGACCTCTTCAAGGAGATCACTCAACTTTTAACCCTGGATAATTTCAGGGAAAATGAGCAGCTTTCCAAATATGGAGATACTAAATCAGCAAGGGCGGTAATGCTTTCGGAGCTGAAGAAGTTGATAGAGGCCAACCCTCTGTTCCGGGATAAGCTCCAGTTCCCGAACCTTAAGAACTCTAGATTGAGGACGCTCATTAATCAGAGCTTGAATTGGCAGCATCAACTATGTAAAAACCCGAGGCCTAACCCAGATATTAAAACTTTATTTTATGATCACTCTTGCTCTCAACCCAATGGTGCTAGAGTCGCATCTCCTGCTCCCCCGGTCATGAATGTGATGCCTAAGCAGGCGGGATTTTCTCAACTAGGTCCTCATGCCGTTGGAGGAGTTATAACTCCATTTCAACCCCAGGCCACAACTCTACCAACTCCTCTTGCTGGTTGGATGGCAAATGCCTCTAATGCAACTCCCATGCCTCATCCAGCAATCTCGGGCGGCCCCCTTGGCCTTGCTGCCCCTCCTAGTTCAGCTGCTCTCTTGAAGCGGCCCATGACTCCTAGCAGCAACCCACCTGTGGATTATCACTCTGCAGATTCAGAGCATGTTCTTAAAAGGCCACGACCTATGGGAATATCTGAGGAGGTTGCCTTACCCACTCCTCACTTGCCTGTAGGGTATACTGGTATTCCGAGGAACCAGTACAATACTGATGAATTGCCAAAGAATGTTGCCGTGACTTTAAATCAAGGATCTACAGTGATGAGCATGGATTTTCACCCTTCTCAGCCAACCCTTCTTTTAGTTGGTACAAATGTTGGTGATATTGCTGTGTGGGAGGTTTCTTCTAGAGAGAGGCTTTCTCATAGAAATTTTAAAGTTTGGGAACTTTCAACTTGCTCAACTCTCTTGCAGTCCACTTTGGTCAAGGATCCCGCTATATCTGTTAACCGTGTTTTGTGGAGCCCTGATGGCAATCAGTTTGGTGTTGCATATTCTAAGCACATTGTGCACTTGTACAATTACAATGGCCGTGATGATCTATTGCAACACTTGGAGATTGATGCTCATAGTGGTGGGGTAAATGACATTGCTTTCTCTCAACCAAACAAGCAATTATGCATCGTGACTTGTGGAGATGACAAAACAATCAAGGTTTATATAATTGTGCTGACATGTTTTGAAATTTTGATTCAACTATTCTTGACAATCTCGTATCTACAGGTTTGGGACGCTACATCTGGTGTTGTGCAATATACTTATGAAGGTCACGAGGCACCTGTTTACTCCATATGCCCACATTCAAAAGAAAATATTCATTTTATCTTTTCTACTTCCCTTGATGGGAAAATAAAGGCTTGGTTGTATGATAATGGGGGCTCGAGAGTTGATTATACTGCACCTGGTCAATGGTGCACGACCATGTCTTATAGCGCTGATGGAACAAGGCTGTTCTCTTGTGGTACTAGTAAAGAAGGTGATTCGTATATTGTCGAGTGGAATGAAAGTGAAGGGTCTGTAAAAAGAACATATTCTGGTTTTCGGAAAAGGTCATCGGGGGTTGTGCAATTTGACACAACAAAAAATCGATTTTTGGCTGCTGGAGATGATTTTATGGTCAAGTTCTGGGATATGGATAATACTAACCTTCTGACAACAACTGATGCAGAGGGTGGATTGTTGGCTTCTCCACGGATACGCTTCAACAAATTAGGGTCACTTCTTGCCGTTTCTACTAGTGATAATTGTATTAAGGTATTAGCCAATGCGGAAGGATTTCAACTGCTGCGTTCTTTTGAAAATCGGCTGTACAGTGTTGCCAGATCTGTTTCTGAGGCAAAGGTGCCCACTATTAGTTCTTTGGGAGCTGTCAGTGCTATGCCTGGAATTAGTGTTGCCATTGCTGATCGTAGCAGCATTGTAACCCCTATTGTTGGATTGAATAGTGATAATCGTAGTATTACGGATGTAAAGCCTAAAGTCATTGATGAGTCGGGTGACAAATCCAAGATATGGAAACTTACTGAAATTAATGAACCGTCTCAATGCTGTTCTCTTAGGCTTCCAGATAATCTACTTGCTGTAAAGGTTGCCAGGTTAATTTATACTAATTCAGGTCATGCAATTTTGGCTTTAGCATCCAATGCTGTTCACAAGCTTTGGAAGTGGCAGAAAACTGATAGAAACGTGACTGTGAAGGCGACTGCAGCTGTGGCCCCACAGATATGGCAACCTACAAGTGGCATATTGATGACCAATGAGATCAGTGATATAAATCCTGAAGAAGCTATTCACTGCTTTGCACTATCCAAGAATGATTCATATGTTATGTCTGCATCAGGCGGGAAGATTTCTCTCTTTAACATGATGACATTCAAGACGATGACAACTTTCATGCCTCCACCACCAACAGCGACCTTCCTGGCATTTCACCCTCAGGACAACAATATCATCGCCATTGGCATGGACGATTCCTCTATCCAAATCTATAATGTCCGAGTTGATGAGGTTAAAAGCAAACTGAGAGGGCATCAGAAGAGGATCACTGGGCTCGCATTTTCGAATGTTCTGAATGTTCTTGTATCTTCGGGAGCAGATGCTCAGTTGTGCGTGTGGGGAATGGACACGTGGGAGAAGCAAGGCAGCAAATTCCTGCAGATTCCTCCGGGGCGAATGTCGGGCCCCTTCGCGGAGACGAAAGTTCAGTTCCATCAAGACCAGCTCCAGTTCTTGGTCGTTCACGATTCCCAGATTGGCATCTACGAGGCTACTAAATTGGACTGCCTCAAGCAGTGGGCTCCACGAGACATGTCGGTAACGCACGCCACGTATTCATGCGACAGCCAAATGATATACGCTGCCTTCACTGACGGAAGCGTCAGCGTCTTCACCTCCGCGCTCCGGCTAAGGTGTCGGATAAGCCCCGCTGCCTATCTCAAATCCCCGCCGCCCCCGCCTTCTTCAAGCGCAAACGTGTATCCGGTGGTGGCGGCCGCCCATCCGACGGAACCCAGCCAGTTAGCCCTGGGCCTGAGCGATGGCAGCGTGCATGTGCTTGAGCCGTCGGACTCGAGTGATGGAAGGTGGGGATCCGCCCCCCCGCCCGAGAATGGCGTGGGCCCCAGCTCCAGCTCCACCCAGCCTCCCGGAAACCCCAACTCTGATCAGCCCCCGAGGTGA

Network for GWHGAAEX014842

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	459	496	0.0044
PF00400.31	WD40	949	981	0.052

Protein Sequence

>GWHPAAEX014842
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEETVLGGEWEEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKKERAKAVDILVKDLKVFAAFNEDLFKEITQLLTLDNFRENEQLSKYGDTKSARAVMLSELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFYDHSCSQPNGARVASPAPPVMNVMPKQAGFSQLGPHAVGGVITPFQPQATTLPTPLAGWMANASNATPMPHPAISGGPLGLAAPPSSAALLKRPMTPSSNPPVDYHSADSEHVLKRPRPMGISEEVALPTPHLPVGYTGIPRNQYNTDELPKNVAVTLNQGSTVMSMDFHPSQPTLLLVGTNVGDIAVWEVSSRERLSHRNFKVWELSTCSTLLQSTLVKDPAISVNRVLWSPDGNQFGVAYSKHIVHLYNYNGRDDLLQHLEIDAHSGGVNDIAFSQPNKQLCIVTCGDDKTIKVYIIVLTCFEILIQLFLTISYLQVWDATSGVVQYTYEGHEAPVYSICPHSKENIHFIFSTSLDGKIKAWLYDNGGSRVDYTAPGQWCTTMSYSADGTRLFSCGTSKEGDSYIVEWNESEGSVKRTYSGFRKRSSGVVQFDTTKNRFLAAGDDFMVKFWDMDNTNLLTTTDAEGGLLASPRIRFNKLGSLLAVSTSDNCIKVLANAEGFQLLRSFENRLYSVARSVSEAKVPTISSLGAVSAMPGISVAIADRSSIVTPIVGLNSDNRSITDVKPKVIDESGDKSKIWKLTEINEPSQCCSLRLPDNLLAVKVARLIYTNSGHAILALASNAVHKLWKWQKTDRNVTVKATAAVAPQIWQPTSGILMTNEISDINPEEAIHCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPTATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLRGHQKRITGLAFSNVLNVLVSSGADAQLCVWGMDTWEKQGSKFLQIPPGRMSGPFAETKVQFHQDQLQFLVVHDSQIGIYEATKLDCLKQWAPRDMSVTHATYSCDSQMIYAAFTDGSVSVFTSALRLRCRISPAAYLKSPPPPPSSSANVYPVVAAAHPTEPSQLALGLSDGSVHVLEPSDSSDGRWGSAPPPENGVGPSSSSTQPPGNPNSDQPPR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.410
SRP064423	SRR2545915	Juvenile tuber	23.460
SRP108465	SRR5643513	five period of Gastrodia elata	34.680
	SRR5643514	five period of Gastrodia elata	34.580
	SRR5643515	five period of Gastrodia elata	34.960
	SRR5643524	five period of Gastrodia elata	34.400
	SRR5643525	five period of Gastrodia elata	33.930
	SRR5643528	five period of Gastrodia elata	26.530
	SRR5643658	five period of Gastrodia elata	33.750
	SRR5643659	five period of Gastrodia elata	35.530
	SRR5643660	five period of Gastrodia elata	42.010
	SRR5643661	five period of Gastrodia elata	36.880
	SRR5643662	five period of Gastrodia elata	33.880
	SRR5643663	five period of Gastrodia elata	33.540
	SRR5643664	five period of Gastrodia elata	35.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.830
SRP279888	Gastro	Gastrodia elata tuber	33.73
	Juven	Juvenile tuber	60.79
	Mother_Gastro	Mother tuber of Gastrodia elata	45.04
	Mother_Juven	Mother tuber of Juvenile	70.90