Detail information of GWHGAAEX014843/evm.TU.scaffold_63.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1999 | 0 | RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 |
| nr | gi|743808040|ref|XP_010928242.1| | 0 | PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Elaeis guineensis] |
| Swissprot | tr|Q9STN3|SPT51_ARATH | 0 | Putative transcription elongation factor SPT5 homolog 1 |
| trEMBL | tr|M0SCS5|M0SCS5_MUSAM | 0 | Transcription elongation factor SPT5 {ECO:0000256|PIRNR:PIRNR036945} |
| TAIR | AT4G08350 | 0 | global transcription factor group A2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 272787 | 282708 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014843
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11942.7 | Spt5_N | 67 | 154 | 7.50E-11 |
| PF03439.12 | Spt5-NGN | 160 | 241 | 1.40E-25 |
| PF00467.28 | KOW | 461 | 485 | 3.10E-06 |
| PF00467.28 | KOW | 687 | 717 | 6.10E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0032784 | Biological Process | regulation of DNA-templated transcription, elongation |
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 66.410 |
| SRR2545915 | Juvenile tuber | 51.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 69.130 |
| SRR5643514 | five period of Gastrodia elata | 62.410 | |
| SRR5643515 | five period of Gastrodia elata | 60.260 | |
| SRR5643524 | five period of Gastrodia elata | 64.240 | |
| SRR5643525 | five period of Gastrodia elata | 56.800 | |
| SRR5643528 | five period of Gastrodia elata | 59.350 | |
| SRR5643658 | five period of Gastrodia elata | 68.530 | |
| SRR5643659 | five period of Gastrodia elata | 55.440 | |
| SRR5643660 | five period of Gastrodia elata | 60.330 | |
| SRR5643661 | five period of Gastrodia elata | 53.840 | |
| SRR5643662 | five period of Gastrodia elata | 57.230 | |
| SRR5643663 | five period of Gastrodia elata | 56.350 | |
| SRR5643664 | five period of Gastrodia elata | 58.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 70.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 46.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 69.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 81.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 73.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 83.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 77.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 74.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 58.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 63.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 61.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 61.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.95 |
| Juven | Juvenile tuber | 85.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 61.87 | |
| Mother_Juven | Mother tuber of Juvenile | 72.37 |