Gene detail

Detail information of GWHGAAEX014846/evm.TU.scaffold_63.14

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383453054\|ref\|YP_005367043.1\|	5.00E-110	efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
KOG	KOG0055	0	Multidrug/pheromone exporter, ABC superfamily
nr	gi\|672115046\|ref\|XP_008779540.1\|	0	PREDICTED: putative multidrug resistance protein [Phoenix dactylifera]
Swissprot	tr\|Q6YUU5\|MDR_ORYSJ	0	Putative multidrug resistance protein
trEMBL	tr\|C5XX27\|C5XX27_SORBI	0	Putative uncharacterized protein Sb04g006100 {ECO:0000313\|EMBL:EES06423.1}
TAIR	AT3G28345	0	ABC transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	338749	342793	-

Transcript Sequence
>GWHTAAEX014846 CGTGCCTGTGCGTGGCCCATGTGACAATCATACGTCCTCACTCGTCAACTCATCCGGGCCTTATAAATAGACACGCACTGAAGGGAGCTCCAGCGGAGGTGGCCACTTTTAATATATCGATTAATTCCAAGTACTAATGGAGAATGAAGGGGTTGGCAAGAAGGGCGGGAAGAAGGCAGCGGCGGCGGCGTCGGCGGTGACGGCGTTGAGGAGCGTGTTCATGCATGCGGACAAGGCGGACTGCTGGCTGATGGGGCTCGGGTTCGTTGGGGCGGTGGGCGACGGGCTCTCGCTGCCGATCCTTCTGACAGTGATGAGCCGGATGATCAACAACCTCGGCATCGGCCCCTCCGCCCCCGGCTACAAGCACTCCATCGACCGCAATGCCCTCTACTTCATCTACCTCGCCGCCGCCAGCTTCGTCGTCGCTTTTCTCGAGGGGTACTGCTGGACGCGGACGGGAGAGAGGCAGGCGTCGAGGATGCGCGCGAGATATCTGAAGGCGGTGCTCCGTCAGGACGTCGGCTATTTCGACCTCAAAGTGGCTTCTACCGCCCAAGTCATAACCAGCGTTTCGAGCGATTCGCTCGTCATACAGGATGTTCTTAGCGAGAAGATTCCAAATTTCATAATGAATTGTTCGACCTTCTTTGGGAGTTATATCGCGGGGTTCGTCCTGATGTGGAACCTTGCATTGGTGGTGTTTCCGACGCTGATCCTGCTGATCATACCGGGGCTGTTGTACGGGCGGGTGCTGCTGGGTCTGGCTCGGGAGATCCAGGTGGAGTACGACAAGGCCGGGGTGGTGGCGGAGCAGGCCGTCTCATCCATTAGGACGGTGTACGCGTTTGTGGCAGAGAGGAGGACGATGGCGGCGTTTTCGGAGGCGCTGGACTCGTCGGTGCTGCTCGGAATCCGGCAAGCGTTTTCGAAGGGGGTGGCGTTCGGGTGCAACGGGGTGACGTTCGCGATATGGGCGCTAGTGGTGTGGCACAGCAGCCGGCTTGTGATGTACCACGGGGCGAGAGGGGGTACGGTGTTCTCGGTGGGGGCGTGCATCATAATCGGGGGGCTGTCGCTGGGGTCGGGCCTCTCCAACTTGAAGTATTTCGGGGAGGCGATGGCGGCGGCGGAGAGGGTGAAGGAGGTGGTGGAGAGGGAGCCACCGATAGACTCGGAGAGCGCGGAAGGGGAGGAGCCGGTGGCGGCGGCGCGCGGGGAGGTGGAGTTCAGAGGGGTGCACTTTGCGTACCCGGCGAGGCCTGACGTGGAGGTGTTCAGGGGATTCAGCCTGAGGGTGGAGGAGGGGAGGACGGTGGCTCTGGTGGGATGCAGCGGTTCCGGCAAATCGACGGCCGTGGCGCTGCTGCAGAGATTCTACAGCCCGGCGGGCGGGGAGATTCTGTTGGACGGCATCGACATCAGGAGGCTGAGGGTCAAGTGGCTGAGGGCGCAGATGGGGCTAGTTAGCCAGGAGCCCCTGCTCTTCGCCATGACTATATGGGAGAACATATTGTTCGGCAAGGAGGATGCCACCACGGAGGAGGTGGTCGCCGCCTCACAGGCGGCCAACGCCCATTCTTTCATCTCTCAGCTTCCCCTCGGCTACGATACGCCGGTGGGCGAGAGAGGGGTGCAGATGTCGGGGGGGCAGAAGCAGAGGATCGCCATTGCTCGAGCCATCGTCCGATCGCCGAAGATTCTTCTGCTGGACGAGGCGACGAGCGCGCTAGACTCGGAATCGGAGCGCGTGGTGCAACAGGCACTGGACGCAGCTGCCGTCGGGCGGACCAGCATCGTGATCGCGCACCGCCTCTCCACCATCCGCGGCGCCGACAGCATCGCCTTCGTTCAGGACGGCCGTGTCGTGGAGTCCGGCTCCCACGAAGTTCTCATTGGCAACCCCGAAGGGCATTACTCCACCCTGGTCCGTCTTCAGCAGCAGCAGCAGCAGCAGCAGTGCGGGGGGGATGCTCCGGCGCGGCATGTCGGCGGCGCGGGGGCTGCTTCCGGGCGGCTGGCGAGCAGCAGCCGCAGCCTTCGGGTCTCTGGCTCGAGCTTCGGATGCAGCGAGGGGGAGGTGGAAGAAGGGGGTGAGAGCGATGCGGGGCGGCGGCCTGCGGTGCCGTCTTTCCGGCGGCTGCTGATGATGAACGCGCCAGAGTGGAAGCGGGCGTTGCTGGGCGGCGGGGCGGCGGCACTTTTCGGGGGGGTGCAGCCGGCTTATTCGTACTCGTTGGGGAGCGTCATAATGGTGTACTTCATAAAGGATCACGAGCGGATGAAGGAGGAGACGAGGAAGTACGCCCTGGTCTTCGTGGGGCTGTCGATCCTCTCCTTCGTCCTGAACCTTGCCCAGCATTACAACCTGGGGGTGATGGGGGAGCTTCTGACTCGCCGGGTGAGGGAGAGGATGCTCTCCAAGATGCTCACCTTCGAGGTCGGCTGGTTCGACCGCGATGAGAACTCCACCGGCGCCATCTGCTCCCGCCTGGCCAAGGACGCCGCTGTCGTCCGATCGCTGGTGGGCGACCGGATGTCCCTCGTTATACAGGCGCTCTCCGCTGTCACCGTGGCCTTCACCATGGGAATGATAATCGCGTGGAGGCTCGCCGTCGTCATGATCGCCGCCCAGCCGCTCGTCATCGCCTGCTTCTACGCTCGCCGGGTGATCCTTAAGAGCATGTCCGGCAAAGCCATCGAGGCCCAGGCCGACAGCAGCAAGCTGGCCGCCGAAGCCGTGGGGAACCACCGGACGGTCACGGCCTTCTCCTCCCAGGGGCGAGTCCTCCGTTTCTTCGACCTTGCCCAGGCGGGGCCGCGCAGGCAGAGCGCCCGCCTGTCCTGGCTCGCCGGAGTCGGCCTCGCCTGCTCCCAATCCCTCACCACCTGCACCTGGGCGCTCGATTTCTGGTACGGCGGCCTCCTCGTCCGCCAGGGCCTCATCACCAGCAAAGCCCTAATCCAGACCTTCATGATCGTCGTAAGCACAGGCCGCGTCATCGCCGACGCCGGCAGCATGACCACGGACCTCGCCAAGGGGTCAGACTCTGTGGCCTCCGTCTTCTCCGTCTTCGACCGGACCACCGCCATCGAGCCAGAGGGCCAGGACGCCATCCAGGCTTTGTCAGGGTCCGTGGAATTCCATAGGGTGGAATTCGCTTACCCGGCTCGGCCGGACGTGGCCATCTTGCGAGGTTTCAGCTTGTCGGTCGAGGCGGGGCAGTCGGCCGCACTGGTGGGGCCAAGCGGGTCGGGCAAGTCGACCCTCATCGCCCTGATCGAGCGGTTCTACGACCCGGCAGGGGGGACGGTGAGGATCGACGGGAGGAACGTGAGGTCCTACAACCTGCGGGCCCTAAGGCGGCACATGGCGTTGGTGGGGCAGGAGCCCACGCTGTTCACAGGGACAGTGTGGGACAACATAACGTACGGGGCGGTTGCGGGGGTGACGGATGCGGAGGTGGAGGCGGCGGCGAGAGCGGCGAACGCGCACAGCTTCATCAGCGGGCTGAAGGACGGATACAAGACGCACTGCGGTGAGCGGGGGGTACAGCTCTCCGGCGGGCAGAAGCAGAGGGTTGCCATCGCGAGGGCCATTCTCAGGAACCCAACCATCCTACTGCTGGACGAGGCCACGAGTGCCCTCGACGGCCACTCCGAGAAGGTCGTGCAGGAGGCTCTGGAGAGGATCATGGTCGGGAGGACAAGCTTGGTCGTCGCCCACAGGCTCACCACCATCCGTTCTTGCAACCTCATCGCCGTCCTCAACAAGGGAGTGCTCGTCGAGAATGGGACCCACACCACCCTCATGGCGAAGGGCCCAACTGGAACCTATTTTGGACTAGTCACCCTTCAGAGTGCCACCCCATCCCCTCAATAA

Network for GWHGAAEX014846

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	40	302	5.10E-44
PF00005.26	ABC_tran	383	530	4.50E-32
PF00664.22	ABC_membrane	686	950	5.20E-47
PF00005.26	ABC_tran	1020	1169	1.60E-34

Protein Sequence

>GWHPAAEX014846
MENEGVGKKGGKKAAAAASAVTALRSVFMHADKADCWLMGLGFVGAVGDGLSLPILLTVMSRMINNLGIGPSAPGYKHSIDRNALYFIYLAAASFVVAFLEGYCWTRTGERQASRMRARYLKAVLRQDVGYFDLKVASTAQVITSVSSDSLVIQDVLSEKIPNFIMNCSTFFGSYIAGFVLMWNLALVVFPTLILLIIPGLLYGRVLLGLAREIQVEYDKAGVVAEQAVSSIRTVYAFVAERRTMAAFSEALDSSVLLGIRQAFSKGVAFGCNGVTFAIWALVVWHSSRLVMYHGARGGTVFSVGACIIIGGLSLGSGLSNLKYFGEAMAAAERVKEVVEREPPIDSESAEGEEPVAAARGEVEFRGVHFAYPARPDVEVFRGFSLRVEEGRTVALVGCSGSGKSTAVALLQRFYSPAGGEILLDGIDIRRLRVKWLRAQMGLVSQEPLLFAMTIWENILFGKEDATTEEVVAASQAANAHSFISQLPLGYDTPVGERGVQMSGGQKQRIAIARAIVRSPKILLLDEATSALDSESERVVQQALDAAAVGRTSIVIAHRLSTIRGADSIAFVQDGRVVESGSHEVLIGNPEGHYSTLVRLQQQQQQQQCGGDAPARHVGGAGAASGRLASSSRSLRVSGSSFGCSEGEVEEGGESDAGRRPAVPSFRRLLMMNAPEWKRALLGGGAAALFGGVQPAYSYSLGSVIMVYFIKDHERMKEETRKYALVFVGLSILSFVLNLAQHYNLGVMGELLTRRVRERMLSKMLTFEVGWFDRDENSTGAICSRLAKDAAVVRSLVGDRMSLVIQALSAVTVAFTMGMIIAWRLAVVMIAAQPLVIACFYARRVILKSMSGKAIEAQADSSKLAAEAVGNHRTVTAFSSQGRVLRFFDLAQAGPRRQSARLSWLAGVGLACSQSLTTCTWALDFWYGGLLVRQGLITSKALIQTFMIVVSTGRVIADAGSMTTDLAKGSDSVASVFSVFDRTTAIEPEGQDAIQALSGSVEFHRVEFAYPARPDVAILRGFSLSVEAGQSAALVGPSGSGKSTLIALIERFYDPAGGTVRIDGRNVRSYNLRALRRHMALVGQEPTLFTGTVWDNITYGAVAGVTDAEVEAAARAANAHSFISGLKDGYKTHCGERGVQLSGGQKQRVAIARAILRNPTILLLDEATSALDGHSEKVVQEALERIMVGRTSLVVAHRLTTIRSCNLIAVLNKGVLVENGTHTTLMAKGPTGTYFGLVTLQSATPSPQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.790
SRP064423	SRR2545915	Juvenile tuber	2.980
SRP108465	SRR5643513	five period of Gastrodia elata	13.080
	SRR5643514	five period of Gastrodia elata	18.410
	SRR5643515	five period of Gastrodia elata	9.670
	SRR5643524	five period of Gastrodia elata	19.780
	SRR5643525	five period of Gastrodia elata	11.300
	SRR5643528	five period of Gastrodia elata	5.510
	SRR5643658	five period of Gastrodia elata	8.280
	SRR5643659	five period of Gastrodia elata	4.050
	SRR5643660	five period of Gastrodia elata	6.780
	SRR5643661	five period of Gastrodia elata	4.220
	SRR5643662	five period of Gastrodia elata	3.820
	SRR5643663	five period of Gastrodia elata	2.360
	SRR5643664	five period of Gastrodia elata	2.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.290
SRP279888	Gastro	Gastrodia elata tuber	4.94
	Juven	Juvenile tuber	12.46
	Mother_Gastro	Mother tuber of Gastrodia elata	6.61
	Mother_Juven	Mother tuber of Juvenile	8.65