Detail information of GWHGAAEX014853/evm.TU.scaffold_63.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|436833792|ref|YP_007319008.1| | 2.00E-21 | hypothetical protein FAES_0403 [Fibrella aestuarina BUZ 2] |
| nr | gi|695022936|ref|XP_009398614.1| | 0 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 5-like isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6R2K1|SRF5_ARATH | 0 | Protein STRUBBELIG-RECEPTOR FAMILY 5 (Precursor) |
| trEMBL | tr|A0A059AJU0|A0A059AJU0_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW53999.1} (Fragment) |
| TAIR | AT1G78980 | 0 | STRUBBELIG-receptor family 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 454394 | 484640 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014853
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 30 | 70 | 8.90E-09 |
| PF00560.32 | LRR_1 | 167 | 189 | 0.42 |
| PF07714.16 | Pkinase_Tyr | 424 | 684 | 1.20E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-V |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.260 |
| SRR2545915 | Juvenile tuber | 0.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.730 |
| SRR5643514 | five period of Gastrodia elata | 3.630 | |
| SRR5643515 | five period of Gastrodia elata | 2.190 | |
| SRR5643524 | five period of Gastrodia elata | 2.400 | |
| SRR5643525 | five period of Gastrodia elata | 0.630 | |
| SRR5643528 | five period of Gastrodia elata | 0.460 | |
| SRR5643658 | five period of Gastrodia elata | 0.660 | |
| SRR5643659 | five period of Gastrodia elata | 1.430 | |
| SRR5643660 | five period of Gastrodia elata | 1.500 | |
| SRR5643661 | five period of Gastrodia elata | 2.190 | |
| SRR5643662 | five period of Gastrodia elata | 1.360 | |
| SRR5643663 | five period of Gastrodia elata | 1.090 | |
| SRR5643664 | five period of Gastrodia elata | 1.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.88 |
| Juven | Juvenile tuber | 2.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.24 | |
| Mother_Juven | Mother tuber of Juvenile | 1.45 |