Detail information of GWHGAAEX014863/evm.TU.scaffold_63.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672195194|ref|XP_008776488.1| | 4.06E-148 | PREDICTED: probable WRKY transcription factor 4 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9XI90|WRKY4_ARATH | 3.00E-76 | Probable WRKY transcription factor 4 |
| trEMBL | tr|M0U1R5|M0U1R5_MUSAM | 8.00E-121 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P19580_001} |
| TAIR | AT1G13960 | 9.00E-76 | WRKY DNA-binding protein 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 735307 | 775756 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014863
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03106.14 | WRKY | 213 | 268 | 5.70E-22 |
| PF03106.14 | WRKY | 384 | 440 | 3.20E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | WRKY |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.930 |
| SRR2545915 | Juvenile tuber | 28.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.970 |
| SRR5643514 | five period of Gastrodia elata | 21.310 | |
| SRR5643515 | five period of Gastrodia elata | 22.740 | |
| SRR5643524 | five period of Gastrodia elata | 21.670 | |
| SRR5643525 | five period of Gastrodia elata | 60.420 | |
| SRR5643528 | five period of Gastrodia elata | 41.140 | |
| SRR5643658 | five period of Gastrodia elata | 48.010 | |
| SRR5643659 | five period of Gastrodia elata | 26.830 | |
| SRR5643660 | five period of Gastrodia elata | 32.240 | |
| SRR5643661 | five period of Gastrodia elata | 30.810 | |
| SRR5643662 | five period of Gastrodia elata | 33.780 | |
| SRR5643663 | five period of Gastrodia elata | 25.770 | |
| SRR5643664 | five period of Gastrodia elata | 25.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 33.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.92 |
| Juven | Juvenile tuber | 25.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.24 | |
| Mother_Juven | Mother tuber of Juvenile | 28.13 |