Detail information of GWHGAAEX014866/evm.TU.scaffold_63.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3471 | 9.00E-87 | RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 |
| nr | gi|695012164|ref|XP_009392829.1| | 0 | PREDICTED: general transcription factor IIH subunit 4 isoform X3 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0SI90|M0SI90_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P27240_001} |
| TAIR | HS4504201 | 9.00E-87 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 811581 | 826960 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014866
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03849.13 | Tfb2 | 15 | 365 | 1.20E-107 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03144 | TFIIH4, GTF2H4, TFB2 | Basal transcription factors | map03022 |
| Nucleotide excision repair | map03420 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006289 | Biological Process | nucleotide-excision repair |
| GO:0001671 | Molecular Function | ATPase activator activity |
| GO:0000439 | Cellular Component | core TFIIH complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 80.170 |
| SRR2545915 | Juvenile tuber | 47.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.560 |
| SRR5643514 | five period of Gastrodia elata | 34.480 | |
| SRR5643515 | five period of Gastrodia elata | 29.480 | |
| SRR5643524 | five period of Gastrodia elata | 29.240 | |
| SRR5643525 | five period of Gastrodia elata | 71.780 | |
| SRR5643528 | five period of Gastrodia elata | 54.770 | |
| SRR5643658 | five period of Gastrodia elata | 74.510 | |
| SRR5643659 | five period of Gastrodia elata | 39.920 | |
| SRR5643660 | five period of Gastrodia elata | 50.490 | |
| SRR5643661 | five period of Gastrodia elata | 38.770 | |
| SRR5643662 | five period of Gastrodia elata | 37.360 | |
| SRR5643663 | five period of Gastrodia elata | 43.560 | |
| SRR5643664 | five period of Gastrodia elata | 41.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 45.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 48.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 57.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 58.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 46.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 61.73 |
| Juven | Juvenile tuber | 41.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.29 | |
| Mother_Juven | Mother tuber of Juvenile | 23.65 |