Gene detail

Detail information of GWHGAAEX014872/evm.TU.scaffold_63.45

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1525	5.00E-75	Sister chromatid cohesion complex Cohesin, subunit PDS5
nr	gi\|743811361\|ref\|XP_010929146.1\|	2.32E-137	PREDICTED: uncharacterized protein LOC105050720 isoform X1 [Elaeis guineensis]
Swissprot	tr\|O04716\|MSH6_ARATH	4.00E-06	DNA mismatch repair protein MSH6
trEMBL	tr\|M0RKY5\|M0RKY5_MUSAM	2.00E-106	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P24100_001}
trEMBL	tr\|M0RKY5\|M0RKY5_MUSAM	4.00E-14	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P24100_001}
TAIR	AT4G31880	5.00E-75	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	985520	1024207	+

Transcript Sequence
>GWHTAAEX014872 ATAACCTCCGCACTTTGTCAGTACTGATGAACTATTCGAATTGTGGAAGTCCCTGAACAACGATAAGCATTCCACAGACATTTCGACATTTCGACATTTCGCGATCTTCCCCTTCCTCCGCTGATCAGCCAGAACCCTAATCTTCGTGATTTAGATGATATGAGGCTGTTCTGGATTCAGAAGTCTTGCGAATCAGTCATCTAAAATGGAGCCCACGGAGAAGGAAATAGAGGTTCGGCTAAGGGAATTGGGCATCAGACTCGCCTCCCCTCCTCGGGATGTTGGCGAACTTCTGTATCTTCTAGATCAAACTGAAATCTATCTATCAAGGGTAGAACAATCTCCATCAGCATCTATGTTTGATGCAATGCGCCCTGCGATGAATTCGTTAATCGTCAAAGAATTCTTAAGCCACTCAGATACAGATGTTAAAGTTTTTGTAGCAGCTTGTTTCAATGAAATAATTAGAATAACTGCTCCTGATGCTCCATATGATGATGCTTTGATGAAGGAGATATTTGCATTGATTGTTGATGCCTTCAAAAAATTGGATGATTTGTCAGGCTGCTCATATTCTAAGAGGGTTTCTATTCTTGAAATTATGGCAAACGTTTGCTCTTGTGTTGTAATGTTGGATCTTGAATGTGATGATCTAATTCTACAGATGTTCAAGATTTTATTGAGTAGTATAAGGCCAAACCATCCTATCAATGTCTTTTCATCTATGGAGGTGATTATGACTCTTATATTGGAGGAGAGCGAAGATATATCTCAAGAACTTGCCCTTTGCTTGCTATCTAATGTTCAAAAGTCAAAAAAGGGAGTTATGCCTGTTACTTGCGAGCTAGCTAAGAAGGTAATCCACAATTGTGCTACAAAACTGAAACCTTACTTTTTGGTTGCTGTTCAAACAATGGACATCTCCTTGAATGATTATTGTGGCATAGTTGCTGCTATATGCCAAGAGCGTCCTGTTACCCTTGAGCAGAATAAGGTGGATAAACCTGGAAGTTGTCTTGAAGAGGTGGGCACTTCTGCTGATAAAACAAAAATTGCGCTCAGCAATGGTGGCATCTTATTAGGAAATGAAAATCCTGCTGTAGAGTCAATCTTTCCAGAAAGTCAGCCTAATATTTCTTTTTCTAGTGAGCAATGTAGGAATGATAGAGTCCCCAGAGCTGAAAATAATGATTTTGTCTTCGTTACTGAAAAATCAGGTAATGAGCAAAATTTGCAGTATAAAAAGGTACGATTGTCCTCTGCTCAGTTGGAAGATGCTAGTGACAGTTCTTGGGTAGATGGTGATAAAGAATCTTTTGATCCAACCGTTAGGAGAACTTGTTTGAAGAAGCAAACTGCTAGAAGTTTGGAATCTGACAATGTCTCTGATAAAGCACCAATAACTGAAGTGCTTGTGGAGTCTGAAAAGGACGCTGAAGTTCAGCCACTAGAATGCATTGCTGATGATTATACGTGTGCTAATTCAGTTAGCCCTAGTTGTGGTTCTCCTGGCATTGGTCTCCCCATTAGGAGGCAAATCACAAATTCTCAGTTTAATGAAATAAAAGGGGCATCGAATAAGCCTTCTGCCTCTTTAGGAAAGGAGAAAATGCAAATAATTACTTTAACAGAGAAAGGAGACTCACCAGCTATAGTTTTTAACAATAAGAATAATTGTTCTGTCAGTATTTTGAACGGGAAATCATCAAATGATTCTGATAAGACATCATATGAAAACAATGCTATGGCTGATGTTGCTGCAGATGGCACTGGTGATGGAAAGTCTTTGAGGAATGAACAGAAGGGAACTTCAAGTGTTATTGTTGTTGATAAGAATCCACTTGAAGACAATGCTACGGTTGATGTTATTGCAGCTGGCATTAGTGATGGAAAATCTTTAAGGAATGAGCAAAAGGAAGTTTCAAGTGTGGTATCTAATGCAAACTCTTTCAGAAACCAATGGCAGTTCAATAAAAACCAGGCAATGGACAAAGATGCCACCAAGGAGGTTGAATCTGCAGATCCATGTCTGAAGGAAATGATTGCTTCAGCCAATACCTCAGGGGAGGCTAATAATGATCAAAATGTTTGGGTGAAGTTGGGTGATGTAGAACGTTGTAGGGAAGCTAATAGAAAATACAATATTTATTTGGAGATTATTGGCCGCAAAATAGAAGTGTGGTGGCCTGATGATATGATGTTCTACAATGGTGTGATTGATGCATTTGACCCAATGACAAAGAAGCACAGGGTTTTGTATGATGATGGGGATGAGGAGATTTTATTTTTAAAAACTGAGCGATGGAATTATATTGATTCTGATAATTTTGAAGGGGGACAGGAAAATTATATTGCAGGTGCAGAATCTACTTTACAAGTGACAAAAGAGATCGCGAGGGTAAGTTCAAGAAAAAGTAAAGCGACTCGAAAGAGAGGTAGATTTGGAAGAAGAAAGTTCTTCCTAAATCCAATTGAACAGCACTCGCTTTCAAAATTCAAAAAGTGGACCTCAGAAGCAGCCACTTCGCTGAATGTTAAAGCTCCAAATGATCCTCCTCTCGATGAGGCAGTATCCGACGTAAAATCCGGGGAGAGGTTTATTTCGCCGCCGGGCAACAGCGTATCGGACCAAGGAGCCGAATTCGAGCCCGACCGAACGAACGAATCTGCAAACCAAGGTACTTCAGAGGATGCCGGAGCTCCTAAATTGGGTGAAACTTCGAAAAGCAAGAGTTTGGATGGAGAAACACTGAGAAAGGATGTAGGAATTCAGGTTGAAATTTCTCAGGCAGCAGCATGTTCTTATGATACATCTGTGGTTAGCATGGCCAGCGATGGCCTGAAGATCAGATGGAAGAGGAAGAGAATTGATGGTGGTATAATTGATGCAAGTGTTTCGACCTATAAAAGCTGCGAAGGGAAGGACATGAACGGCTGAGGCAGCTTGCTGAATATCTCCTCAAAAAGTAACAAAAGACAGAAAAATTAGAGCTGGGTATGATCTTAAGTTCTTTTCCATGGTGGTAGAATTGTTGAAATTTATTTGTGGAAGGTTTCTAGTATTATCTTAGCTTGTTTTTGGAAACTATAGTATAGTATATATATAATTGATTGTATTACGCCGGCATTTTAGGAATGAATGGTGTTTATGTAAGCTAAGTGAGTTGATGAAATCATGATTTTCCTGGATTTTTATTGTATGGTATAATGTCATTCTGATTGTTTTAATGACACAAGTATTCTAGGTAAAATTATGTATGCCACTCCAATTTTATTAGATTACATTTATGATACATAAACCGCTATTTTTATGATCTATTTGCTCTTTTTATGGTATTTTGTAATGATTGCCTATTCTTAACAGAAAA

Network for GWHGAAEX014872

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.510
SRP064423	SRR2545915	Juvenile tuber	26.830
SRP108465	SRR5643513	five period of Gastrodia elata	25.600
	SRR5643514	five period of Gastrodia elata	23.430
	SRR5643515	five period of Gastrodia elata	24.870
	SRR5643524	five period of Gastrodia elata	25.900
	SRR5643525	five period of Gastrodia elata	23.530
	SRR5643528	five period of Gastrodia elata	23.190
	SRR5643658	five period of Gastrodia elata	23.610
	SRR5643659	five period of Gastrodia elata	33.640
	SRR5643660	five period of Gastrodia elata	33.180
	SRR5643661	five period of Gastrodia elata	30.190
	SRR5643662	five period of Gastrodia elata	31.600
	SRR5643663	five period of Gastrodia elata	32.410
	SRR5643664	five period of Gastrodia elata	32.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.910
SRP279888	Gastro	Gastrodia elata tuber	39.84
	Juven	Juvenile tuber	30.46
	Mother_Gastro	Mother tuber of Gastrodia elata	21.92
	Mother_Juven	Mother tuber of Juvenile	27.32