Detail information of GWHGAAEX014875/evm.TU.scaffold_63.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530780562|ref|YP_008432369.1| | 1.00E-58 | hypothetical protein N186_05055 [Thermofilum sp. 1910b] |
| KOG | KOG2268 | 0 | Serine/threonine protein kinase |
| nr | gi|743876254|ref|XP_010907543.1| | 0 | PREDICTED: serine/threonine-protein kinase rio2 [Elaeis guineensis] |
| trEMBL | tr|M0SGN6|M0SGN6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21700_001} |
| TAIR | AT3G51270 | 0 | protein serine/threonine kinases;ATP binding;catalytics |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 1048974 | 1068863 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014875
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF09202.10 | Rio2_N | 8 | 89 | 5.80E-35 |
| PF01163.21 | RIO1 | 106 | 277 | 7.20E-50 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07179 | RIOK2 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.840 |
| SRR2545915 | Juvenile tuber | 13.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.590 |
| SRR5643514 | five period of Gastrodia elata | 15.720 | |
| SRR5643515 | five period of Gastrodia elata | 13.200 | |
| SRR5643524 | five period of Gastrodia elata | 12.720 | |
| SRR5643525 | five period of Gastrodia elata | 9.640 | |
| SRR5643528 | five period of Gastrodia elata | 9.680 | |
| SRR5643658 | five period of Gastrodia elata | 10.650 | |
| SRR5643659 | five period of Gastrodia elata | 16.700 | |
| SRR5643660 | five period of Gastrodia elata | 17.590 | |
| SRR5643661 | five period of Gastrodia elata | 15.010 | |
| SRR5643662 | five period of Gastrodia elata | 17.370 | |
| SRR5643663 | five period of Gastrodia elata | 14.890 | |
| SRR5643664 | five period of Gastrodia elata | 14.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.30 |
| Juven | Juvenile tuber | 23.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.01 | |
| Mother_Juven | Mother tuber of Juvenile | 21.20 |