Detail information of GWHGAAEX014876/evm.TU.scaffold_63.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|20089613|ref|NP_615688.1| | 3.00E-40 | DNA ligase (ATP) [Methanosarcina acetivorans C2A] |
| KOG | KOG0966 | 0 | ATP-dependent DNA ligase IV |
| nr | gi|743766978|ref|XP_010913736.1| | 0 | PREDICTED: DNA ligase 4 [Elaeis guineensis] |
| Swissprot | tr|Q9LL84|DNLI4_ARATH | 0 | DNA ligase 4 |
| trEMBL | tr|D7SQI2|D7SQI2_VITVI | 0 | DNA ligase {ECO:0000256|RuleBase:RU000617} |
| TAIR | AT5G57160 | 0 | DNA ligase IV |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 1072714 | 1100097 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014876
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04675.13 | DNA_ligase_A_N | 8 | 187 | 3.20E-34 |
| PF01068.20 | DNA_ligase_A_M | 227 | 442 | 4.10E-42 |
| PF04679.14 | DNA_ligase_A_C | 467 | 584 | 5.20E-14 |
| PF16589.4 | BRCT_2 | 652 | 735 | 5.70E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10777 | LIG4, DNL4 | Non-homologous end-joining | map03450 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006310 | Biological Process | DNA recombination |
| GO:0071897 | Biological Process | DNA biosynthetic process |
| GO:0006281 | Biological Process | DNA repair |
| GO:0051103 | Biological Process | DNA ligation involved in DNA repair |
| GO:0003910 | Molecular Function | DNA ligase (ATP) activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003909 | Molecular Function | DNA ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.510 |
| SRR2545915 | Juvenile tuber | 11.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.310 |
| SRR5643514 | five period of Gastrodia elata | 35.620 | |
| SRR5643515 | five period of Gastrodia elata | 36.950 | |
| SRR5643524 | five period of Gastrodia elata | 35.820 | |
| SRR5643525 | five period of Gastrodia elata | 33.650 | |
| SRR5643528 | five period of Gastrodia elata | 29.530 | |
| SRR5643658 | five period of Gastrodia elata | 33.980 | |
| SRR5643659 | five period of Gastrodia elata | 24.200 | |
| SRR5643660 | five period of Gastrodia elata | 27.000 | |
| SRR5643661 | five period of Gastrodia elata | 24.950 | |
| SRR5643662 | five period of Gastrodia elata | 27.980 | |
| SRR5643663 | five period of Gastrodia elata | 27.390 | |
| SRR5643664 | five period of Gastrodia elata | 28.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.98 |
| Juven | Juvenile tuber | 36.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 71.03 | |
| Mother_Juven | Mother tuber of Juvenile | 80.16 |