Detail information of GWHGAAEX014877/evm.TU.scaffold_63.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46446975|ref|YP_008340.1| | 1.00E-22 | hypothetical protein pc1341 [Candidatus Protochlamydia amoebophila UWE25] |
| KOG | KOG1909 | 5.00E-160 | Ran GTPase-activating protein |
| nr | gi|672107910|ref|XP_008782416.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: RAN GTPase-activating protein 1-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LE82|RAGP1_ARATH | 0 | RAN GTPase-activating protein 1 |
| trEMBL | tr|Q65XN1|Q65XN1_ORYSJ | 0 | cDNA, clone: J090026K18, full insert sequence {ECO:0000313|EMBL:BAH01315.1} |
| TAIR | AT5G19320_2 | 5.00E-160 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 1100171 | 1113318 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014877
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13943.5 | WPP | 35 | 130 | 5.80E-35 |
| PF13516.5 | LRR_6 | 233 | 253 | 1 |
| PF13516.5 | LRR_6 | 376 | 393 | 1.7 |
| PF13516.5 | LRR_6 | 429 | 450 | 0.016 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14319 | RANGAP1 | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 44.810 |
| SRR2545915 | Juvenile tuber | 58.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 92.960 |
| SRR5643514 | five period of Gastrodia elata | 75.910 | |
| SRR5643515 | five period of Gastrodia elata | 75.710 | |
| SRR5643524 | five period of Gastrodia elata | 74.840 | |
| SRR5643525 | five period of Gastrodia elata | 56.510 | |
| SRR5643528 | five period of Gastrodia elata | 58.340 | |
| SRR5643658 | five period of Gastrodia elata | 57.030 | |
| SRR5643659 | five period of Gastrodia elata | 92.200 | |
| SRR5643660 | five period of Gastrodia elata | 100.050 | |
| SRR5643661 | five period of Gastrodia elata | 92.210 | |
| SRR5643662 | five period of Gastrodia elata | 101.000 | |
| SRR5643663 | five period of Gastrodia elata | 92.990 | |
| SRR5643664 | five period of Gastrodia elata | 81.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 94.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 82.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 93.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 83.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 74.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 81.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 83.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 83.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 100.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 99.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 112.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 112.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 78.14 |
| Juven | Juvenile tuber | 76.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 56.45 | |
| Mother_Juven | Mother tuber of Juvenile | 55.77 |