Detail information of GWHGAAEX014880/evm.TU.scaffold_63.54


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|670384099|ref|XP_008672860.1|1.38E-138PREDICTED: nuclease PA3 isoform X1 [Zea mays]
Swissprottr|Q9C9G4|ENDO2_ARATH2.00E-123Endonuclease 2 (Precursor)
trEMBLtr|A0A096QG37|A0A096QG37_MAIZE3.00E-137Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G041352_P01}
TAIRAT1G682906.00E-123endonuclease 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006211463781148583-
Transcript Sequence

Network for GWHGAAEX014880

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02265.15S1-P1_nuclease252877.30E-75
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006308Biological ProcessDNA catabolic process
GO:0003676Molecular Functionnucleic acid binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0004519Molecular Functionendonuclease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.080
SRP108465SRR5643513five period of Gastrodia elata0.380
SRR5643514five period of Gastrodia elata0.680
SRR5643515five period of Gastrodia elata0.280
SRR5643524five period of Gastrodia elata0.620
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.150
SRR5643658five period of Gastrodia elata0.230
SRR5643659five period of Gastrodia elata0.060
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.200
SRR5643663five period of Gastrodia elata0.150
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.730
SRR6049655Rhizomagastrodiae_C368-T10_good_10.680
SRR6049656Rhizomagastrodiae_C368-T07_good_10.660
SRR6049657Rhizomagastrodiae_C368-T07_good_10.700
SRR6049658Rhizomagastrodiae_C368-T04_good_10.900
SRR6049659Rhizomagastrodiae_C368-T04_good_10.830
SRR6049660Rhizomagastrodiae_C368-T01_good_10.620
SRR6049661Rhizomagastrodiae_C368-T04_good_10.690
SRR6049662Rhizomagastrodiae_C368-T01_good_10.000
SRR6049663Rhizomagastrodiae_C368-T01_good_10.460
SRR6049664Rhizomagastrodiae_C368-T10_good_11.200
SRR6049665Rhizomagastrodiae_C368-T10_good_11.200
SRP279888GastroGastrodia elata tuber 0.22
JuvenJuvenile tuber0.11
Mother_GastroMother tuber of Gastrodia elata 2.45
Mother_JuvenMother tuber of Juvenile 1.52