Gene detail

Detail information of GWHGAAEX014885/evm.TU.scaffold_63.60_evm.TU.scaffold_63.62

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|384208682\|ref\|YP_005594402.1\|	8.00E-158	cation transport ATPase [Brachyspira intermedia PWS/A]
KOG	KOG0204	0	Calcium transporting ATPase
nr	gi\|672163333\|ref\|XP_008801512.1\|	0	PREDICTED: calcium-transporting ATPase 8, plasma membrane-type isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LU41\|ACA9_ARATH	0	Calcium-transporting ATPase 9, plasma membrane-type
trEMBL	tr\|B8AIL2\|B8AIL2_ORYSI	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}
TAIR	AT5G57110	0	autoinhibited Ca2+ -ATPase, isoform 8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	1225460	1258442	-

Transcript Sequence
>GWHTAAEX014885 ATGGAACAGCCGTCGCCGAACAGATACCAGCGGCACTACGACGAGGAGATTGGGGAAGGGGGCGCGAATGGTGAGGACAACGATGAGATATACGTCTCTAGCGCCTTTGACATTCCGCCGAAGAATGCGCCTATCGAGCGTCTCCGGAGATGGAGGCAAGCTGCTCTTGTTCTTAATGCTTCACGTCGGTTTAGATATACCTTGGATTTGAAGAAGGAGGAAGAAAAAGAGCAGTTAAGGAGGAAAATTAGGGCACATGCTCAAGTCATACGGGTTTTTCTCTGGGAAGCTTGTCAAGATCTAACTCTTGTAATCCTTATATTAGCTGCGGTTATATCCTTAGTTTTGGGCATAAAAACTGAGGGTATCAATGAAGGATGGTATGATGGTGGAAGCATTGCCTTTGCTGTTATCCTTGTTATTTTTGTTACGGCTACAAGTGATTATAAGCAGTCTCTTCAATTCCAAAATCTTAATGAGGAGAAGCGGAACATACATTTGGAGGTTATTCGAGGTGGTAGAAGGGTTGAAATTTCAATATTTGATATTGTTGTTGGTGATTTAGTACCGCTAAATATCGGTGATCAGGTTCCTGCTGATGGAATTTTAGTTTCTGGACATTCCCTGGCGGTTGATGAATCAAGCTTCACTGGAGAAAGCAAAATTACACATAAGGATATGAAAAAGCCTTTCTTGGTGTCTGGATGCAAAGTTGCTGATGGTTATGGGACTATGCTTGTCACTGCTGTGGGGATCAATACTGAATGGGGATTATTGATGGCTAGCATATCAGAAGACAATGGTGAAGAAACTCCTTTGCAGGTTCGATTGAATGGTGTTGCTACATTAATTGGGATAGTAGGGCTCTCTGTTGCTGCTTTTGTCCTTGTCATCCTTTTGGCTAGATATTTCTCTGGTCACACAAAGAAGCCTGATGGAAGTATTCAATTCATCAAGGGGCAGACGAGTATTAAAGATGCACTAAACGGAGCTGTAAAGATTCTGACAATTGCAGTTACTATTGTGGTAGTTGCTGTACCTGAAGGTCTCCCACTTGCTGTTACATTGACTTTAGCATATTCAATGCGAAAGATGATGGCAGACAAGGCATTGGTGCGTAGGCTTTCAGCTTGTGAAACTATGGGCTCGGCTACAACAATCTGTAGTGATAAAACCGGAACTCTAACACTAAATCAGATGACTGTCGTGGAAGCACATGTTGGTGGAGAAAAGCTTGCTTCTCCAGATGATGTAAAACAGTTATTTTCTTCCGTATATGCCCCATTGATTGAAGGCATAGCCCAGAATACAACTGGCAATGTGTATGAGCCAGAGGATGGTGCCCCCTTTGAAGTTACTGGTTCCCCTACAGAAAAGGCAATACTTAGTTGGGGGATCAAGCTTGGAATGAAGTTTGATGATATCAGATCAAAATCATCAATTCTCCATGCTATTCCCTTCAACTCAGAGAAGAAGCGAGGAGGTGTTGCTGTACATGAGGCAAACTCTGAAGTCCTCCATGTACATTGGAAGGGAGCAGCTGAGATAATTCTAGCTTCTTGCACCAGCTGGATGGATTCAAATGGTCACCTGCAGGAAATTAGCTCAGTTCAGATCGACTTCTTTAATAAAGCTATTGAAGATATGGCAGCACTTAGTCTTCGCTGTGTTGCTTTTGCATACAGGCTATATGAAATAAAAAATTTACCTGAGGAGCAAGAAAGGGATAATTGGGCAATGCCTGAAAATGATCTGATTTTACTTGGTATCGTAGGGATAAAGGATCCTTGTAGACCTGGAGTTAGAGATGCTGTGGAACTATGTGCTAACGCAGGCGTCAAGGTTCGCATGGTGACTGGGGATAATCTTCAGACTGCTAAAGCTATTGCTTTGGACTGTGGAATCCTTCATTCAGAAGAGGAAGCGACAGAACCAACTTTAATAGAGGGGAAAGTTTTTCGTGCTTATTCTGAGAAAGCTAGAGAAGAAATTGCTGAAAAGATATCAGTAATGGGAAGGTCTTCTCCAAATGACAAGCTTTTGCTTGTCCAAGCTTTAAGGAAAAGGGGCCATGTTGTTGCTGTTACAGGAGACGGTACAAATGACGCTCCAGCACTGCATGATGCCGATATTGGTCTTGCAATGGGAATACAGGGCACTGAAGTTGCAAAAGAAAGCTCAGACATCATTATTCTTGATGATAATTTTGCTTCAGTGGTGAAGGTTGTTCGGTGGGGTCGATCTGTATATGCGAATATTCAGAAGTTTATTCAGTTTCAGCTCACTGTTAATGTTGCAGCTCTTGTGATTAATGTGGTTGCTGCCGTTTCGTCTGGGGATGTTCCTTTGAATGCTGTTGAGCTTTTGTGGGTTAATCTAATTATGGACACTCTTGGCGCACTTGCATTAGCCACTGAGCCACCCACAGACCAACTTATGAAGAGGCCCCCAGTTGGTAGGAGGGAACCCCTTATTACTAACATCATGTGGAGAAATCTCGTAGTACAAGCACTTTACCAAGTGACAATCCTCCTTGTGCTTAATTTTGGCGGTATAAGCGTTCTTGGTTTGTCCAATGACACGCGGGAACGTGCGGACAAAGTGAAAAACACTTTTATTTTTAATACCTTTGTGTTCTGTCAGATATTCAACGAATTTAATGCCCGGAAACCAGATGAGATGAACGTTTTCGTTGGGATGACTAAGAACCATCTTTTTATGGGAATTATTGGAATTACGCTCGTGCTTCAGATTGTGATCGTCGAGTTCCTTGGGAAGTTCACCTCAACGGTCAGGCTCAGCTGGAAACTGTGGATGGTTTCTGTTGGACTTGCATTCCTCAGTTGGCCGCTTGCTGTGGTCGGGAAGCTCATCCCCGTGCCGAAAATTCCTCTCGTGGAATATTTTGGGAGGTGTCTACAGAAGAAACCCGCCAAAGAAAGCCAAGGTTCAGCGAAGCATATCCTTAAAAGAGGTACTGCAGGCGGCGGCGGAGCCGGAATTTCGGCGAGGGCCGGCGGAGAGATGGCCGTTCGCTGGTCGCATTCCATAAGAAGCGCGGGAATTAATCTCATGCCGCCTGATCTGCTGTCATGTCTCCTCACTGCGCTGATCTTGTGGATTGGGAATTGGGATATGCCCTAATTTCTCTTTTGATTTCGGAGTTTTTTAATTTATTTTTAGAATCAAGAAAATGCATGCTGAATAAAAGTGGGA

Network for GWHGAAEX014885

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12515.7	CaATP_NAI	34	75	9.70E-19
PF00122.19	E1-E2_ATPase	166	366	2.20E-37
PF00702.25	Hydrolase	385	710	2.90E-17
PF00689.20	Cation_ATPase_C	781	958	4.00E-46

Protein Sequence

>GWHPAAEX014885
MEQPSPNRYQRHYDEEIGEGGANGEDNDEIYVSSAFDIPPKNAPIERLRRWRQAALVLNASRRFRYTLDLKKEEEKEQLRRKIRAHAQVIRVFLWEACQDLTLVILILAAVISLVLGIKTEGINEGWYDGGSIAFAVILVIFVTATSDYKQSLQFQNLNEEKRNIHLEVIRGGRRVEISIFDIVVGDLVPLNIGDQVPADGILVSGHSLAVDESSFTGESKITHKDMKKPFLVSGCKVADGYGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLSVAAFVLVILLARYFSGHTKKPDGSIQFIKGQTSIKDALNGAVKILTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAHVGGEKLASPDDVKQLFSSVYAPLIEGIAQNTTGNVYEPEDGAPFEVTGSPTEKAILSWGIKLGMKFDDIRSKSSILHAIPFNSEKKRGGVAVHEANSEVLHVHWKGAAEIILASCTSWMDSNGHLQEISSVQIDFFNKAIEDMAALSLRCVAFAYRLYEIKNLPEEQERDNWAMPENDLILLGIVGIKDPCRPGVRDAVELCANAGVKVRMVTGDNLQTAKAIALDCGILHSEEEATEPTLIEGKVFRAYSEKAREEIAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHDADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVELLWVNLIMDTLGALALATEPPTDQLMKRPPVGRREPLITNIMWRNLVVQALYQVTILLVLNFGGISVLGLSNDTRERADKVKNTFIFNTFVFCQIFNEFNARKPDEMNVFVGMTKNHLFMGIIGITLVLQIVIVEFLGKFTSTVRLSWKLWMVSVGLAFLSWPLAVVGKLIPVPKIPLVEYFGRCLQKKPAKESQGSAKHILKRGTAGGGGAGISARAGGEMAVRWSHSIRSAGINLMPPDLLSCLLTALILWIGNWDMP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0070588	Biological Process	calcium ion transmembrane transport
GO:0005388	Molecular Function	calcium-transporting ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0000166	Molecular Function	nucleotide binding
GO:0005516	Molecular Function	calmodulin binding
GO:0016020	Cellular Component	membrane
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.180
SRP064423	SRR2545915	Juvenile tuber	31.370
SRP108465	SRR5643513	five period of Gastrodia elata	3.810
	SRR5643514	five period of Gastrodia elata	9.880
	SRR5643515	five period of Gastrodia elata	5.370
	SRR5643524	five period of Gastrodia elata	11.890
	SRR5643525	five period of Gastrodia elata	3.400
	SRR5643528	five period of Gastrodia elata	2.900
	SRR5643658	five period of Gastrodia elata	3.120
	SRR5643659	five period of Gastrodia elata	3.150
	SRR5643660	five period of Gastrodia elata	3.670
	SRR5643661	five period of Gastrodia elata	2.490
	SRR5643662	five period of Gastrodia elata	0.810
	SRR5643663	five period of Gastrodia elata	0.620
	SRR5643664	five period of Gastrodia elata	0.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.140
SRP279888	Gastro	Gastrodia elata tuber	7.43
	Juven	Juvenile tuber	13.36
	Mother_Gastro	Mother tuber of Gastrodia elata	13.06
	Mother_Juven	Mother tuber of Juvenile	13.87