Detail information of GWHGAAEX014887/evm.TU.scaffold_63.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0966 | 7.00E-11 | ATP-dependent DNA ligase IV |
| nr | gi|670375186|ref|XP_008668921.1| | 5.97E-11 | PREDICTED: putative DNA ligase 4 isoform X6 [Zea mays] |
| Swissprot | tr|Q7X7E9|DNLI4_ORYSJ | 7.00E-13 | Putative DNA ligase 4 |
| trEMBL | tr|C5YFJ3|C5YFJ3_SORBI | 4.00E-11 | Putative uncharacterized protein Sb06g027820 {ECO:0000313|EMBL:EES12813.1} |
| TAIR | AT5G57160 | 7.00E-11 | DNA ligase IV |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 1258633 | 1271894 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014887
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01068.20 | DNA_ligase_A_M | 8 | 55 | 1.30E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10777 | LIG4, DNL4 | Non-homologous end-joining | map03450 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006310 | Biological Process | DNA recombination |
| GO:0051103 | Biological Process | DNA ligation involved in DNA repair |
| GO:0006281 | Biological Process | DNA repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003910 | Molecular Function | DNA ligase (ATP) activity |
| GO:0003909 | Molecular Function | DNA ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.190 |
| SRR2545915 | Juvenile tuber | 11.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.940 |
| SRR5643514 | five period of Gastrodia elata | 4.120 | |
| SRR5643515 | five period of Gastrodia elata | 1.320 | |
| SRR5643524 | five period of Gastrodia elata | 4.980 | |
| SRR5643525 | five period of Gastrodia elata | 0.510 | |
| SRR5643528 | five period of Gastrodia elata | 1.440 | |
| SRR5643658 | five period of Gastrodia elata | 0.550 | |
| SRR5643659 | five period of Gastrodia elata | 1.900 | |
| SRR5643660 | five period of Gastrodia elata | 1.050 | |
| SRR5643661 | five period of Gastrodia elata | 1.060 | |
| SRR5643662 | five period of Gastrodia elata | 0.210 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 1.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.54 |
| Juven | Juvenile tuber | 1.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.68 | |
| Mother_Juven | Mother tuber of Juvenile | 1.24 |