Gene detail

Detail information of GWHGAAEX014892/evm.TU.scaffold_63.69

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15888521\|ref\|NP_354202.1\|	4.00E-95	DNA-directed RNA polymerase [Agrobacterium fabrum str. C58]
KOG	KOG1038	0	Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation
nr	gi\|672119610\|ref\|XP_008783046.1\|	0	PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Phoenix dactylifera]
Swissprot	tr\|Q8VWF8\|RPOT2_NICSY	0	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|F6HGF2\|F6HGF2_VITVI	0	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU003805}
TAIR	AT5G15700	0	DNA/RNA polymerases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	1344096	1392223	-

Transcript Sequence
>GWHTAAEX014892 CATTTAAGAAGGAGACACAAAATGCGAGGTCAAGATTTATCGATTCAGTAGGGTTTAAGGCGGGGGGGAGCTCGCATTGCAGGAAGCCGGCGTCCTGCCCTTCACGAAATTTCTGCAATCTTCCCCGTTCCACTCTGATGAACTCTCAGCTTATCCTTTCCCAGATTTCTGTTGTCCATCTTATTTCATCATTTCTTCTAGAAATACAGAGCGAATTTTCATGAGCTGCTGCGCCGCCGTCATTCTACCCAAATATCCTTCTGTCGATTTCAATCAGTTTCTGTCAAAGTCCCATTGCCAGCCCCTATCTTCTTCGTACCTAAACGACATGTGGAGAACCTTCCTAAGACGAGCTCCCCGCTCTTATCCTTCATCTTCTTCGCCCCCCCTTTGTACTCCCATCTCCAATTTCCTCGAAGGGGACTTCTACTCGAGGAAAGGCTGCATCTTGGAGTTGAGAATGAGCCGTGAAGAATATGGCAGGCTGCTTTCTCGATCAAGTGTCTCTTTTCTTCAGAGAGAACGGTCCAGGATCTTGCCAGGTAAATCACCTTGTAGCGGAATTCTTTCCGTCACCAGTGTCAAGGGTTTGGCCAGCGTTGCTGAAGCGGTTGAAGTCCTTTCCTCCACTGATGTTGATGATGACATTGCCTCAATTGAGGGAACTCAAGTTTTTTTGGAAGGCGTAAACAGCGTTGAAGAGGCCATTGCTGACAATTCTGCGGGGCGTTTCAGGGAAATGGCGCAGCAGCCTAAGAGGCAACGGAAGCGTAAGACGAAGATGATTGCAGGCCTGGGAGATGGAAAGTACGCCACTCTTCGCCGGAGGCAGTACAAGATTGAGACGGGGGCTTGGGCTCAGGCGGCACAGGAATACCAAGAGCTTTTGAGCGACATGTGCGAGAAGAAGCTTGCGCCTAATCTACCTTACATGAAATCTTTATTCTTGGGCTGGTTTGAACCCTTCAGGGACCAGATTTCTGCAGAGCAGGAACTATTTAAAAACCCCAAGCACAGATCTTCACTTGCACCGTACTTTAACGAGCTTCCTCCAGATATGATGGCAGTCATAACTATGCATAAACTGATGAGTTTGCTCATGATTGGAACTGGAGATGCGTGTTGTCGGGTTGTCAAGGCTTCTTGCCAGATTGGTGAAGCCATTGAACATGAGGCCAAGCTTTATAGATTTTTGCAAAAATCAAAACAAACTGATAGCAATAAGAAAAATCAAAATGATAATGATGATCCTATTGCTAAAGAAAATGGTCGTTTGAGGAAAAAAGTTGAAGACTTGATGAAAAAGCAAAAGCTTCCCCAGTTAAGGAGAGTCATAGAAGGGCAAGAAAAAACTAAGCCATGGGGTCAAGATGCTCAGGCTAAGGTTGGGAGCCGCTTGATTGAATTATTGATTGATACAGCTTATATTCAGCCCTCGGTTGATCAGCAAATAGATGGCTCATTTGATATCCGCCCTGCATTTAGGCATACACTCAAGACATTCACATTGGAAGGGAATAATTCAGGCAGGAATTCGAGCAAAAGATATGGGGTTATTGAATGTGATGCACTGGTTCGACAAGGACTAGAAAGAACGGCCAAGCATATGGTTATTCCGTACATGCCTATGTTAATACCTCCAGTAAATTGGACAGGTTATGAAAAAGGAGGACACTTGTTTTTGCCATCTTACATAATGAGAACTCACGGAGCAAGAAAGCAGCGCAGTGCATTAAAAATGACGCCAAAGAAGCAATTGCAACCGGTTTTTGAGGCGCTTAACACTCTTGGAGAAGTCAGATGGAGGATTAACAAACGTGTTCTTGGTATTGTAGACAGACTGTGGTCAAGCGGGGGATGCCTTGCAGACTTGGTTGATCGTGAAGATATTCCACTCCCAGAGAAGCCTGATACTGAAGATCAGGATGAAATTAAAAGGTGGAAGTGGAAATTAAGCGAAACAAAAAAGGAAAATAGTGAGAGGCATTCTCTGCGGTGTGATGTTGAGCTTAAACTAGCTGTAGCTCGAAAAATGAAAGATGAGGAAGGTTTTTATTATCCACACAACCTGGATTTTAGGGGCCGTGCATATCCAATGCATCCACATCTGAATCATCTTGGTTCAGATTTATGTCGAGGTGTATTAGAATTTGCTGAGGGGCGTCCATTGGGAAAGTCAGGCTTACTTTGGTTAAAGATTCATCTGGCAAATTTATTTGGAAATGGCATTGACAAAAAATCATACGAAGGCAGAATTGCTTTCACTGAGAATCATTTAAGTGATATATTTGACTCAGCTGATAGACCATTTGAAGGTGAACGCTGGTGGTTGACTGCAGAAGATCCATTTCAGTGCTTAGCAGTTTGTATAAACATTGCAGAAGCGTTAAGAAGCTCATCGCCTGAAACTACTATTTCACACTTACCAGTGCATCAGGATGGTTCTTGCAATGGTCTTCAGCATTATGCAGCTCTTGGAAGGGACAAGTTGGGAGCTGCAGCCGTAAACTTGATTGCTGGAGACAAGCCCTCTGATGTTTACTCCAGCATAGCAGCCAGAGTGTTGGAAATCATGCAAAGAGATGCTGAAAAAGTTGATGCTGCTGACTCAAATGTTGCTTATGCTAGGCTTTTAATTGGTCATGTGGACCGCAAATTAGTGAAACAGACTGTTATGACCTCTGTGTATGGTGTTACCTTTATTGGTGCTCGTGAACAAATAAAGAAAAGGTTAAAGGAACGCAATGTTAATATGGATAATAGTGAGTTATTTAAAGCTTCTTGTTATGCTGCAAAGATTACTTTGACAGCTCTTGAGGAGATGTTTCAAGCCGCACGAAGTATCATGACCTGGCTAGGTGACTGTGCGAAGCTGATTGCTTTGGAAAATCAACCTGTGAGGTGGACAACACCCCTTGGCCTTCCAGTAGTTCAGCCATATAATAAACTAAAAGCACATATGATCCGAACTTCTCTTCAAATCTTGACACTGCAGCGGGAGAGCGACCTGGTGATGGTGAAACGGCAGAGAACAGCTTTTCCACCAAACTTTATTCATTCTCTTGATGGATCACACATGATGATGACTGCGGTGGCCTGCAGAAATGCTGGTTTGAATTTTGCAGGCGTCCATGATTCTTACTGGACCCATGCTTGTGATGTGGATGTGATGAATAAAATTCTTCGAGAAAAGTTTGTGGAGCTTTACGAGCAACCGATTTTGGAGACTCTGCTGGAAAGCTTCAAAGCATCATTCCCCACCTTAACTTTCCCATCGACGCCGGTGCGAGGCGATTTCGACGTCAAAGAAGTTCTGAATTCACCCTATTTCTTCAATTAAGGGATGATCCGAGCCGAGCGGCTCTAATCTAGCCGCATTTTAGTGCCACTGCAGCAGCAGTCGCAGCAACTCTGTACAGCAGATAGATAAAGCGTGACCGTTAATTACATCACGACAGCTTATTTCAGTGCCCTTTTCTGCAAGTTCAGCCTGATGTGCTGCTTCTCCTTTGCGAATACTGATGAAGAAAGGTTAAAAAGATTCAGGAGGTTATCCTGATCCAGTTTGGTCGGGTGTTGATTTAAGCCCTTAGATTTGTTTTGAGATTTGTGCAGTATTCTTCTCATAGGATACATTCTGAAGCGAATTCAAGGACTTCTGATCAAAATATTATATTAAGATCAGTCAATAATATATTGATATATCAAAATGGATGTTAAATATAGGTAAAATACTCAAGATTTTGGTGTTATTCAATAATTTTCCCTTATTATGTTTTCCC

Network for GWHGAAEX014892

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14700.5	RPOL_N	203	524	1.70E-79
PF00940.18	RNA_pol	648	1039	3.10E-160

Protein Sequence

>GWHPAAEX014892
MSCCAAVILPKYPSVDFNQFLSKSHCQPLSSSYLNDMWRTFLRRAPRSYPSSSSPPLCTPISNFLEGDFYSRKGCILELRMSREEYGRLLSRSSVSFLQRERSRILPGKSPCSGILSVTSVKGLASVAEAVEVLSSTDVDDDIASIEGTQVFLEGVNSVEEAIADNSAGRFREMAQQPKRQRKRKTKMIAGLGDGKYATLRRRQYKIETGAWAQAAQEYQELLSDMCEKKLAPNLPYMKSLFLGWFEPFRDQISAEQELFKNPKHRSSLAPYFNELPPDMMAVITMHKLMSLLMIGTGDACCRVVKASCQIGEAIEHEAKLYRFLQKSKQTDSNKKNQNDNDDPIAKENGRLRKKVEDLMKKQKLPQLRRVIEGQEKTKPWGQDAQAKVGSRLIELLIDTAYIQPSVDQQIDGSFDIRPAFRHTLKTFTLEGNNSGRNSSKRYGVIECDALVRQGLERTAKHMVIPYMPMLIPPVNWTGYEKGGHLFLPSYIMRTHGARKQRSALKMTPKKQLQPVFEALNTLGEVRWRINKRVLGIVDRLWSSGGCLADLVDREDIPLPEKPDTEDQDEIKRWKWKLSETKKENSERHSLRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGVLEFAEGRPLGKSGLLWLKIHLANLFGNGIDKKSYEGRIAFTENHLSDIFDSADRPFEGERWWLTAEDPFQCLAVCINIAEALRSSSPETTISHLPVHQDGSCNGLQHYAALGRDKLGAAAVNLIAGDKPSDVYSSIAARVLEIMQRDAEKVDAADSNVAYARLLIGHVDRKLVKQTVMTSVYGVTFIGAREQIKKRLKERNVNMDNSELFKASCYAAKITLTALEEMFQAARSIMTWLGDCAKLIALENQPVRWTTPLGLPVVQPYNKLKAHMIRTSLQILTLQRESDLVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRNAGLNFAGVHDSYWTHACDVDVMNKILREKFVELYEQPILETLLESFKASFPTLTFPSTPVRGDFDVKEVLNSPYFFN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.250
SRP064423	SRR2545915	Juvenile tuber	23.500
SRP108465	SRR5643513	five period of Gastrodia elata	13.160
	SRR5643514	five period of Gastrodia elata	10.890
	SRR5643515	five period of Gastrodia elata	10.050
	SRR5643524	five period of Gastrodia elata	10.240
	SRR5643525	five period of Gastrodia elata	3.000
	SRR5643528	five period of Gastrodia elata	1.210
	SRR5643658	five period of Gastrodia elata	1.270
	SRR5643659	five period of Gastrodia elata	19.090
	SRR5643660	five period of Gastrodia elata	25.790
	SRR5643661	five period of Gastrodia elata	19.420
	SRR5643662	five period of Gastrodia elata	18.340
	SRR5643663	five period of Gastrodia elata	18.050
	SRR5643664	five period of Gastrodia elata	22.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.690
SRP279888	Gastro	Gastrodia elata tuber	28.57
	Juven	Juvenile tuber	39.91
	Mother_Gastro	Mother tuber of Gastrodia elata	4.38
	Mother_Juven	Mother tuber of Juvenile	14.46