Gene detail

Detail information of GWHGAAEX014893/evm.TU.scaffold_63.70

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743810913\|ref\|XP_010929030.1\|	0	PREDICTED: BTB/POZ domain-containing protein At5g47800 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9FIK1\|Y5780_ARATH	9.00E-158	BTB/POZ domain-containing protein At5g47800
trEMBL	tr\|M0SEM6\|M0SEM6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P14590_001}
TAIR	AT5G47800	3.00E-157	Phototropic-responsive NPH3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000062	1408164	1425928	-

Transcript Sequence
>GWHTAAEX014893 ATCTTCTTGCATAGCATGCAATTGCTCATTAATCTATGGTTTAACCTCTCATCTCAGAAGAGATCAATATATAAGCTGGAAAGGCCCACTGCTACAACAAAACCCTCTCCTTCTCACTTTCTTGCAATCCAAGCAGAAAAATGAAGAATTCTACCTCACCTTCAGGATGCTGAAGTGATGAGCAGAGGCTGTGGCTCTGAAAATTCTCATCACTGTTCGAAGCATAAGCCAACATGAAATATATGAAACTAGGAACAAAACCAGATACCTTCTATACTCAAAAGGCCACAAGGTCTATAGTGACGGATGTTTCAACAGACCTTATCATACAAATTAACAACACAAAGTATCTTCTGCATAAGTTTCCCCTTCTTCTCAAGTGTGGCCTACTACAACGGCTATGTTCAGAACCAGAAGAAGGCAGCCCTCCAACTTTCATCTCACTCCATAACCTCCCCGGCGGTGAACAGGCCTTCGAGTTCTGCGCCAAGTTTTGCTACAACATCACAATTAGCCTCAGCGCCCATAACTTCATTCCAGCCATGGCCGCAGCTTGCCACCTTCAAATGACAGAATCCGTTTTCAGAGGAAATCTCATCGACAAACTCCAAAATTTCTTCCGTTCCTTCATTCTCCATGGATGGAAAGACTCCATTGTCGCACTCCAGAAAGCTTGCATTTTGAGCTGGAATGATGAGCAGAAAATCAAGCAAACTTGTCTGGAATCCATTGTAGACAAAATCCTCACACACCCTTCTCTTGTTTCATGGTCTTATACTTACACAAGACCGAGCTTCAGCAAGAAGAAGCATCGCTCTGCTCCCAAGGATTGGTGGACGGAAGATATATCTGATTTCGATATTGATCTCTTCCGCTCAATAATTTATGCCATCAGATCCAAAAAACTCATTTTTCCAGCTTTGATTGGAGAAGCACTCCATGTCTTTGCGTGCAAGCAACTTCCAGATCCTGATGATGCTGATTCAATTGATCAGAGCTGCATAAAAAAGCACAAAAGAGTGCTTGAATCCATTGCCAGCATGATTCCAGCTGAGCCTCGCTCTGTATCAGGTAGATTCTTTGTGAAGCTGCTAAAAATTGCAGTTTTGGTTGGTGCATCTCCTTCTGTGAAGGCTGAGTTAGTCAGAGGGTGCGGGCTTCAGCTTGATGAAGTCAAGCCAAGCGATCTTCTCTTCTGCTCATCCTCAGTAATGCCAGGGTCATATGACACAGATATTGTAGAAGCAATACTGGAGAATTTCTTGAAACAATTCCAGACTCCAGAAACAGAGACTGAGAACAGGCTTGATTTGATGATAAGTGTAGCTCTGATCTTTGACTCTTACCTTGAGATTGTTGCTCATGATCCTGGGCTTTCAGCAACAAAATTTCTGGATCTTGCTGCTGTTTTGCCAGATAATGCTAGACTGAAGCACGATAGGCTCTATCTAGCCATTGATGCTTACATCAAGAAACATGCCGAGCTAAGCAAGAGCGATCGGAAGCGGCTATGCCAACTAATAGATTGCAATAAACTTTCATCAGAAGTCAGATCAGATGCAGTATCAAATGACAGGATGCCGTTAAGAACAATAGTGCAACTCTTATTCATTCAACAAGGTGGTGTTGTGGGGAGCCCGCATGAACTACCTAGTAAAAGCCCTTTTAATGATCCTTTGAAGAATGCATGTGATAGGCAAGAAAGAAGAGGGAACAGAGACAAGAAATGAGTGTTTATCGAAAGTTGGAATCTAAAGAAGCAAAGAAGAGGTGAAAAATAGAATGCATATTTTTCAATGTTCTTAAAACCTCCATCATGATATGAGTTGCATTAACATTGAATATATCATTTTTAGATGTATATTTGTTTTGGTTTTTTCAATTGTAGTTTAATAGTTTAGAGATGAAAATGATGCATTTTTTGTTGTTTATTATACTATTTTTTCAAATAGAAAGATTTTTTTTTAACTATTTCAAAGTTAG

Network for GWHGAAEX014893

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03000.13	NPH3	199	438	3.10E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.200
SRP064423	SRR2545915	Juvenile tuber	4.740
SRP108465	SRR5643513	five period of Gastrodia elata	3.980
	SRR5643514	five period of Gastrodia elata	4.480
	SRR5643515	five period of Gastrodia elata	3.450
	SRR5643524	five period of Gastrodia elata	4.390
	SRR5643525	five period of Gastrodia elata	30.130
	SRR5643528	five period of Gastrodia elata	9.420
	SRR5643658	five period of Gastrodia elata	59.020
	SRR5643659	five period of Gastrodia elata	7.490
	SRR5643660	five period of Gastrodia elata	6.690
	SRR5643661	five period of Gastrodia elata	7.510
	SRR5643662	five period of Gastrodia elata	5.940
	SRR5643663	five period of Gastrodia elata	7.730
	SRR5643664	five period of Gastrodia elata	6.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.890
SRP279888	Gastro	Gastrodia elata tuber	19.58
	Juven	Juvenile tuber	5.29
	Mother_Gastro	Mother tuber of Gastrodia elata	5.90
	Mother_Juven	Mother tuber of Juvenile	3.44