Detail information of GWHGAAEX014896/evm.TU.scaffold_63.74


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17760Zn-binding protein Push
nrgi|743858075|ref|XP_010942266.1|0PREDICTED: auxin transport protein BIG [Elaeis guineensis]
Swissprottr|B9G2A8|BIG_ORYSJ0Auxin transport protein BIG
trEMBLtr|F6GVU9|F6GVU9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB44084.1}
TAIRAT3G022600auxin transport protein (BIG)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006215707971615352+
Transcript Sequence

Network for GWHGAAEX014896

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00569.16ZZ246825008.20E-09
PF13764.5E3_UbLigase_R4403949230
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBR-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms91.920
SRR2545915Juvenile tuber62.400
SRP108465SRR5643513five period of Gastrodia elata14.010
SRR5643514five period of Gastrodia elata16.500
SRR5643515five period of Gastrodia elata15.790
SRR5643524five period of Gastrodia elata15.230
SRR5643525five period of Gastrodia elata17.810
SRR5643528five period of Gastrodia elata13.200
SRR5643658five period of Gastrodia elata14.580
SRR5643659five period of Gastrodia elata16.980
SRR5643660five period of Gastrodia elata24.270
SRR5643661five period of Gastrodia elata17.190
SRR5643662five period of Gastrodia elata14.420
SRR5643663five period of Gastrodia elata19.120
SRR5643664five period of Gastrodia elata23.540
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.150
SRR6049655Rhizomagastrodiae_C368-T10_good_112.810
SRR6049656Rhizomagastrodiae_C368-T07_good_120.890
SRR6049657Rhizomagastrodiae_C368-T07_good_123.500
SRR6049658Rhizomagastrodiae_C368-T04_good_129.540
SRR6049659Rhizomagastrodiae_C368-T04_good_130.610
SRR6049660Rhizomagastrodiae_C368-T01_good_125.450
SRR6049661Rhizomagastrodiae_C368-T04_good_127.430
SRR6049662Rhizomagastrodiae_C368-T01_good_116.470
SRR6049663Rhizomagastrodiae_C368-T01_good_121.550
SRR6049664Rhizomagastrodiae_C368-T10_good_115.280
SRR6049665Rhizomagastrodiae_C368-T10_good_115.280
SRP279888GastroGastrodia elata tuber 26.86
JuvenJuvenile tuber43.27
Mother_GastroMother tuber of Gastrodia elata 20.31
Mother_JuvenMother tuber of Juvenile 34.58