Detail information of GWHGAAEX014897/evm.TU.scaffold_63.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15668289|ref|NP_247082.1| | 2.00E-27 | translation initiation factor IF-2 [Methanocaldococcus jannaschii DSM 2661] |
| KOG | KOG2916 | 9.00E-158 | Translation initiation factor 2, alpha subunit (eIF-2alpha) |
| nr | gi|743771191|ref|XP_010915882.1| | 0 | PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like isoform X2 [Elaeis guineensis] |
| trEMBL | tr|A9NN70|A9NN70_PICSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:ABK22081.1} |
| TAIR | AT5G05470 | 9.00E-158 | eukaryotic translation initiation factor 2 alpha subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000062 | 1616229 | 1622475 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014897
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00575.22 | S1 | 20 | 93 | 1.30E-12 |
| PF07541.11 | EIF_2_alpha | 131 | 246 | 4.50E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03237 | EIF2S1 | RNA transport | map03013 |
| Protein processing in endoplasmic reticulum | map04141 | ||
| Autophagy - animal | map04140 | ||
| Autophagy - yeast | map04138 | ||
| Apoptosis | map04210 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003743 | Molecular Function | translation initiation factor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.400 |
| SRR2545915 | Juvenile tuber | 31.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 76.920 |
| SRR5643514 | five period of Gastrodia elata | 58.580 | |
| SRR5643515 | five period of Gastrodia elata | 66.190 | |
| SRR5643524 | five period of Gastrodia elata | 54.630 | |
| SRR5643525 | five period of Gastrodia elata | 65.450 | |
| SRR5643528 | five period of Gastrodia elata | 75.950 | |
| SRR5643658 | five period of Gastrodia elata | 58.570 | |
| SRR5643659 | five period of Gastrodia elata | 112.640 | |
| SRR5643660 | five period of Gastrodia elata | 129.850 | |
| SRR5643661 | five period of Gastrodia elata | 121.150 | |
| SRR5643662 | five period of Gastrodia elata | 133.600 | |
| SRR5643663 | five period of Gastrodia elata | 104.530 | |
| SRR5643664 | five period of Gastrodia elata | 86.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 77.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 89.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 63.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 65.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 55.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 67.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 60.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 108.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 96.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 113.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 113.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 87.43 |
| Juven | Juvenile tuber | 46.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.95 | |
| Mother_Juven | Mother tuber of Juvenile | 31.19 |